Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= OVR01_0021_B09
(1955 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001035249.1| testican-3 isoform 1 [Homo sapiens]. 648 0.0
Alignment gi|NP_058646.2| testican-3 isoform 2 [Homo sapiens]. 642 0.0
Alignment gi|NP_001191281.1| testican-3 isoform 3 [Homo sapiens]. 589 e-168
Alignment gi|NP_001191285.1| testican-3 isoform 7 [Homo sapiens]. 560 e-159
Alignment gi|NP_001191283.1| testican-3 isoform 5 [Homo sapiens]. 536 e-152
Alignment gi|NP_001191284.1| testican-3 isoform 6 [Homo sapiens]. 497 e-140
Alignment gi|NP_001191282.1| testican-3 isoform 4 [Homo sapiens]. 496 e-140
Alignment gi|NP_001191287.1| testican-3 isoform 9 [Homo sapiens]. 488 e-138
Alignment gi|NP_001191288.1| testican-3 isoform 10 [Homo sapiens]. 483 e-136
Alignment gi|NP_004589.1| testican-1 precursor [Homo sapiens]. 421 e-117
>ref|NP_001035249.1| testican-3 isoform 1 [Homo sapiens].
Length = 433
Score = 648 bits (1671), Expect = 0.0
Identities = 298/362 (82%), Positives = 318/362 (87%)
Frame = +2
Query: 332 GRPAGGSFLDDKQWLSTVSQYDREAGQWNRFRDDDYFRTWSPGRAFDQALDPAKDPCLNM 511
GR GG+FLDDKQWL+T+SQYD+E GQWN+FRDDDYFRTWSPG+ FDQALDPAKDPCL M
Sbjct: 31 GRSDGGNFLDDKQWLTTISQYDKEVGQWNKFRDDDYFRTWSPGKPFDQALDPAKDPCLKM 90
Query: 512 KCGRHEVCIVQGSGTAVCIGQRRLAHSVKDAGAGHKQRRGSPPSTCRQCLGVSMSPVCGS 691
KC RH+VCI Q S TAVCI RRL H +K+AG H+Q RG STC+QC V SPVCGS
Sbjct: 91 KCSRHKVCIAQDSQTAVCISHRRLTHRMKEAGVDHRQWRGPILSTCKQCPVVYPSPVCGS 150
Query: 692 DGHAYSSQCKLEYQACVLGKQISVRCEGHCPCPSDTTRSSSGNVKRVCTSLEFREVSTRL 871
DGH YS QCKLEYQACVLGKQISV+CEGHCPCPSD S+S NVKR C+ LEFREV+ RL
Sbjct: 151 DGHTYSFQCKLEYQACVLGKQISVKCEGHCPCPSDKPTSTSRNVKRACSDLEFREVANRL 210
Query: 872 RDWFKALHESGSQNKKAKGSLRPERSRFDTSILPICKDSLGWMFNRLDTNYDLLLDQSEL 1051
RDWFKALHESGSQNKK K LRPERSRFDTSILPICKDSLGWMFNRLDTNYDLLLDQSEL
Sbjct: 211 RDWFKALHESGSQNKKTKTLLRPERSRFDTSILPICKDSLGWMFNRLDTNYDLLLDQSEL 270
Query: 1052 GSIYLDKNEQCTEAFFNSCDTYRDRSISNNEWCYCFQRQQDPPCQTELSSIQKRLGVKKL 1231
SIYLDKNEQCT+AFFNSCDTY+D ISNNEWCYCFQRQQDPPCQTELS+IQKR GVKKL
Sbjct: 271 RSIYLDKNEQCTKAFFNSCDTYKDSLISNNEWCYCFQRQQDPPCQTELSNIQKRQGVKKL 330
Query: 1232 LGQYIPQCDEDGYYKPMQCHGSAGQCWCVDRYGNEVVGSRTDGVADCAADFEISGDFASG 1411
LGQYIP CDEDGYYKP QCHGS GQCWCVDRYGNEV+GSR +GVADCA DFEISGDFASG
Sbjct: 331 LGQYIPLCDEDGYYKPTQCHGSVGQCWCVDRYGNEVMGSRINGVADCAIDFEISGDFASG 390
Query: 1412 DF 1417
DF
Sbjct: 391 DF 392
>ref|NP_058646.2| testican-3 isoform 2 [Homo sapiens].
Length = 436
Score = 642 bits (1657), Expect = 0.0
Identities = 298/365 (81%), Positives = 318/365 (87%), Gaps = 3/365 (0%)
Frame = +2
Query: 332 GRPAGGSFLDDKQWLSTVSQYDREAGQWNRFRD---DDYFRTWSPGRAFDQALDPAKDPC 502
GR GG+FLDDKQWL+T+SQYD+E GQWN+FRD DDYFRTWSPG+ FDQALDPAKDPC
Sbjct: 31 GRSDGGNFLDDKQWLTTISQYDKEVGQWNKFRDEVEDDYFRTWSPGKPFDQALDPAKDPC 90
Query: 503 LNMKCGRHEVCIVQGSGTAVCIGQRRLAHSVKDAGAGHKQRRGSPPSTCRQCLGVSMSPV 682
L MKC RH+VCI Q S TAVCI RRL H +K+AG H+Q RG STC+QC V SPV
Sbjct: 91 LKMKCSRHKVCIAQDSQTAVCISHRRLTHRMKEAGVDHRQWRGPILSTCKQCPVVYPSPV 150
Query: 683 CGSDGHAYSSQCKLEYQACVLGKQISVRCEGHCPCPSDTTRSSSGNVKRVCTSLEFREVS 862
CGSDGH YS QCKLEYQACVLGKQISV+CEGHCPCPSD S+S NVKR C+ LEFREV+
Sbjct: 151 CGSDGHTYSFQCKLEYQACVLGKQISVKCEGHCPCPSDKPTSTSRNVKRACSDLEFREVA 210
Query: 863 TRLRDWFKALHESGSQNKKAKGSLRPERSRFDTSILPICKDSLGWMFNRLDTNYDLLLDQ 1042
RLRDWFKALHESGSQNKK K LRPERSRFDTSILPICKDSLGWMFNRLDTNYDLLLDQ
Sbjct: 211 NRLRDWFKALHESGSQNKKTKTLLRPERSRFDTSILPICKDSLGWMFNRLDTNYDLLLDQ 270
Query: 1043 SELGSIYLDKNEQCTEAFFNSCDTYRDRSISNNEWCYCFQRQQDPPCQTELSSIQKRLGV 1222
SEL SIYLDKNEQCT+AFFNSCDTY+D ISNNEWCYCFQRQQDPPCQTELS+IQKR GV
Sbjct: 271 SELRSIYLDKNEQCTKAFFNSCDTYKDSLISNNEWCYCFQRQQDPPCQTELSNIQKRQGV 330
Query: 1223 KKLLGQYIPQCDEDGYYKPMQCHGSAGQCWCVDRYGNEVVGSRTDGVADCAADFEISGDF 1402
KKLLGQYIP CDEDGYYKP QCHGS GQCWCVDRYGNEV+GSR +GVADCA DFEISGDF
Sbjct: 331 KKLLGQYIPLCDEDGYYKPTQCHGSVGQCWCVDRYGNEVMGSRINGVADCAIDFEISGDF 390
Query: 1403 ASGDF 1417
ASGDF
Sbjct: 391 ASGDF 395
>ref|NP_001191281.1| testican-3 isoform 3 [Homo sapiens].
Length = 385
Score = 589 bits (1518), Expect = e-168
Identities = 273/329 (82%), Positives = 288/329 (87%)
Frame = +2
Query: 431 DDYFRTWSPGRAFDQALDPAKDPCLNMKCGRHEVCIVQGSGTAVCIGQRRLAHSVKDAGA 610
DDYFRTWSPG+ FDQALDPAKDPCL MKC RH+VCI Q S TAVCI RRL H +K+AG
Sbjct: 16 DDYFRTWSPGKPFDQALDPAKDPCLKMKCSRHKVCIAQDSQTAVCISHRRLTHRMKEAGV 75
Query: 611 GHKQRRGSPPSTCRQCLGVSMSPVCGSDGHAYSSQCKLEYQACVLGKQISVRCEGHCPCP 790
H+Q RG STC+QC V SPVCGSDGH YS QCKLEYQACVLGKQISV+CEGHCPCP
Sbjct: 76 DHRQWRGPILSTCKQCPVVYPSPVCGSDGHTYSFQCKLEYQACVLGKQISVKCEGHCPCP 135
Query: 791 SDTTRSSSGNVKRVCTSLEFREVSTRLRDWFKALHESGSQNKKAKGSLRPERSRFDTSIL 970
SD S+S NVKR C+ LEFREV+ RLRDWFKALHESGSQNKK K LRPERSRFDTSIL
Sbjct: 136 SDKPTSTSRNVKRACSDLEFREVANRLRDWFKALHESGSQNKKTKTLLRPERSRFDTSIL 195
Query: 971 PICKDSLGWMFNRLDTNYDLLLDQSELGSIYLDKNEQCTEAFFNSCDTYRDRSISNNEWC 1150
PICKDSLGWMFNRLDTNYDLLLDQSEL SIYLDKNEQCT+AFFNSCDTY+D ISNNEWC
Sbjct: 196 PICKDSLGWMFNRLDTNYDLLLDQSELRSIYLDKNEQCTKAFFNSCDTYKDSLISNNEWC 255
Query: 1151 YCFQRQQDPPCQTELSSIQKRLGVKKLLGQYIPQCDEDGYYKPMQCHGSAGQCWCVDRYG 1330
YCFQRQQDPPCQTELS+IQKR GVKKLLGQYIP CDEDGYYKP QCHGS GQCWCVDRYG
Sbjct: 256 YCFQRQQDPPCQTELSNIQKRQGVKKLLGQYIPLCDEDGYYKPTQCHGSVGQCWCVDRYG 315
Query: 1331 NEVVGSRTDGVADCAADFEISGDFASGDF 1417
NEV+GSR +GVADCA DFEISGDFASGDF
Sbjct: 316 NEVMGSRINGVADCAIDFEISGDFASGDF 344
>ref|NP_001191285.1| testican-3 isoform 7 [Homo sapiens].
Length = 393
Score = 560 bits (1444), Expect = e-159
Identities = 265/362 (73%), Positives = 283/362 (78%)
Frame = +2
Query: 332 GRPAGGSFLDDKQWLSTVSQYDREAGQWNRFRDDDYFRTWSPGRAFDQALDPAKDPCLNM 511
GR GG+FLDDKQWL+T+SQYD+E GQWN+FRDDDYFRTWSPG+ FDQALDPAKDPCL M
Sbjct: 31 GRSDGGNFLDDKQWLTTISQYDKEVGQWNKFRDDDYFRTWSPGKPFDQALDPAKDPCLKM 90
Query: 512 KCGRHEVCIVQGSGTAVCIGQRRLAHSVKDAGAGHKQRRGSPPSTCRQCLGVSMSPVCGS 691
KC RH+VCI Q S TAVCI RRL H +K+AG H+Q RG STC+QC V SPVCGS
Sbjct: 91 KCSRHKVCIAQDSQTAVCISHRRLTHRMKEAGVDHRQWRGPILSTCKQCPVVYPSPVCGS 150
Query: 692 DGHAYSSQCKLEYQACVLGKQISVRCEGHCPCPSDTTRSSSGNVKRVCTSLEFREVSTRL 871
DGH YS QCKLEYQACVLGKQISV+CEGHCPCPSD S+S NVKR
Sbjct: 151 DGHTYSFQCKLEYQACVLGKQISVKCEGHCPCPSDKPTSTSRNVKR-------------- 196
Query: 872 RDWFKALHESGSQNKKAKGSLRPERSRFDTSILPICKDSLGWMFNRLDTNYDLLLDQSEL 1051
FDTSILPICKDSLGWMFNRLDTNYDLLLDQSEL
Sbjct: 197 --------------------------GFDTSILPICKDSLGWMFNRLDTNYDLLLDQSEL 230
Query: 1052 GSIYLDKNEQCTEAFFNSCDTYRDRSISNNEWCYCFQRQQDPPCQTELSSIQKRLGVKKL 1231
SIYLDKNEQCT+AFFNSCDTY+D ISNNEWCYCFQRQQDPPCQTELS+IQKR GVKKL
Sbjct: 231 RSIYLDKNEQCTKAFFNSCDTYKDSLISNNEWCYCFQRQQDPPCQTELSNIQKRQGVKKL 290
Query: 1232 LGQYIPQCDEDGYYKPMQCHGSAGQCWCVDRYGNEVVGSRTDGVADCAADFEISGDFASG 1411
LGQYIP CDEDGYYKP QCHGS GQCWCVDRYGNEV+GSR +GVADCA DFEISGDFASG
Sbjct: 291 LGQYIPLCDEDGYYKPTQCHGSVGQCWCVDRYGNEVMGSRINGVADCAIDFEISGDFASG 350
Query: 1412 DF 1417
DF
Sbjct: 351 DF 352
>ref|NP_001191283.1| testican-3 isoform 5 [Homo sapiens].
Length = 344
Score = 536 bits (1381), Expect = e-152
Identities = 250/303 (82%), Positives = 264/303 (87%)
Frame = +2
Query: 509 MKCGRHEVCIVQGSGTAVCIGQRRLAHSVKDAGAGHKQRRGSPPSTCRQCLGVSMSPVCG 688
MKC RH+VCI Q S TAVCI RRL H +K+AG H+Q RG STC+QC V SPVCG
Sbjct: 1 MKCSRHKVCIAQDSQTAVCISHRRLTHRMKEAGVDHRQWRGPILSTCKQCPVVYPSPVCG 60
Query: 689 SDGHAYSSQCKLEYQACVLGKQISVRCEGHCPCPSDTTRSSSGNVKRVCTSLEFREVSTR 868
SDGH YS QCKLEYQACVLGKQISV+CEGHCPCPSD S+S NVKR C+ LEFREV+ R
Sbjct: 61 SDGHTYSFQCKLEYQACVLGKQISVKCEGHCPCPSDKPTSTSRNVKRACSDLEFREVANR 120
Query: 869 LRDWFKALHESGSQNKKAKGSLRPERSRFDTSILPICKDSLGWMFNRLDTNYDLLLDQSE 1048
LRDWFKALHESGSQNKK K LRPERSRFDTSILPICKDSLGWMFNRLDTNYDLLLDQSE
Sbjct: 121 LRDWFKALHESGSQNKKTKTLLRPERSRFDTSILPICKDSLGWMFNRLDTNYDLLLDQSE 180
Query: 1049 LGSIYLDKNEQCTEAFFNSCDTYRDRSISNNEWCYCFQRQQDPPCQTELSSIQKRLGVKK 1228
L SIYLDKNEQCT+AFFNSCDTY+D ISNNEWCYCFQRQQDPPCQTELS+IQKR GVKK
Sbjct: 181 LRSIYLDKNEQCTKAFFNSCDTYKDSLISNNEWCYCFQRQQDPPCQTELSNIQKRQGVKK 240
Query: 1229 LLGQYIPQCDEDGYYKPMQCHGSAGQCWCVDRYGNEVVGSRTDGVADCAADFEISGDFAS 1408
LLGQYIP CDEDGYYKP QCHGS GQCWCVDRYGNEV+GSR +GVADCA DFEISGDFAS
Sbjct: 241 LLGQYIPLCDEDGYYKPTQCHGSVGQCWCVDRYGNEVMGSRINGVADCAIDFEISGDFAS 300
Query: 1409 GDF 1417
GDF
Sbjct: 301 GDF 303
>ref|NP_001191284.1| testican-3 isoform 6 [Homo sapiens].
Length = 340
Score = 497 bits (1280), Expect = e-140
Identities = 231/278 (83%), Positives = 246/278 (88%)
Frame = +2
Query: 584 AHSVKDAGAGHKQRRGSPPSTCRQCLGVSMSPVCGSDGHAYSSQCKLEYQACVLGKQISV 763
+ ++K+AG H+Q RG STC+QC V SPVCGSDGH YS QCKLEYQACVLGKQISV
Sbjct: 22 SETMKEAGVDHRQWRGPILSTCKQCPVVYPSPVCGSDGHTYSFQCKLEYQACVLGKQISV 81
Query: 764 RCEGHCPCPSDTTRSSSGNVKRVCTSLEFREVSTRLRDWFKALHESGSQNKKAKGSLRPE 943
+CEGHCPCPSD S+S NVKR C+ LEFREV+ RLRDWFKALHESGSQNKK K LRPE
Sbjct: 82 KCEGHCPCPSDKPTSTSRNVKRACSDLEFREVANRLRDWFKALHESGSQNKKTKTLLRPE 141
Query: 944 RSRFDTSILPICKDSLGWMFNRLDTNYDLLLDQSELGSIYLDKNEQCTEAFFNSCDTYRD 1123
RSRFDTSILPICKDSLGWMFNRLDTNYDLLLDQSEL SIYLDKNEQCT+AFFNSCDTY+D
Sbjct: 142 RSRFDTSILPICKDSLGWMFNRLDTNYDLLLDQSELRSIYLDKNEQCTKAFFNSCDTYKD 201
Query: 1124 RSISNNEWCYCFQRQQDPPCQTELSSIQKRLGVKKLLGQYIPQCDEDGYYKPMQCHGSAG 1303
ISNNEWCYCFQRQQDPPCQTELS+IQKR GVKKLLGQYIP CDEDGYYKP QCHGS G
Sbjct: 202 SLISNNEWCYCFQRQQDPPCQTELSNIQKRQGVKKLLGQYIPLCDEDGYYKPTQCHGSVG 261
Query: 1304 QCWCVDRYGNEVVGSRTDGVADCAADFEISGDFASGDF 1417
QCWCVDRYGNEV+GSR +GVADCA DFEISGDFASGDF
Sbjct: 262 QCWCVDRYGNEVMGSRINGVADCAIDFEISGDFASGDF 299
>ref|NP_001191282.1| testican-3 isoform 4 [Homo sapiens].
Length = 316
Score = 496 bits (1278), Expect = e-140
Identities = 231/275 (84%), Positives = 244/275 (88%)
Frame = +2
Query: 593 VKDAGAGHKQRRGSPPSTCRQCLGVSMSPVCGSDGHAYSSQCKLEYQACVLGKQISVRCE 772
+K+AG H+Q RG STC+QC V SPVCGSDGH YS QCKLEYQACVLGKQISV+CE
Sbjct: 1 MKEAGVDHRQWRGPILSTCKQCPVVYPSPVCGSDGHTYSFQCKLEYQACVLGKQISVKCE 60
Query: 773 GHCPCPSDTTRSSSGNVKRVCTSLEFREVSTRLRDWFKALHESGSQNKKAKGSLRPERSR 952
GHCPCPSD S+S NVKR C+ LEFREV+ RLRDWFKALHESGSQNKK K LRPERSR
Sbjct: 61 GHCPCPSDKPTSTSRNVKRACSDLEFREVANRLRDWFKALHESGSQNKKTKTLLRPERSR 120
Query: 953 FDTSILPICKDSLGWMFNRLDTNYDLLLDQSELGSIYLDKNEQCTEAFFNSCDTYRDRSI 1132
FDTSILPICKDSLGWMFNRLDTNYDLLLDQSEL SIYLDKNEQCT+AFFNSCDTY+D I
Sbjct: 121 FDTSILPICKDSLGWMFNRLDTNYDLLLDQSELRSIYLDKNEQCTKAFFNSCDTYKDSLI 180
Query: 1133 SNNEWCYCFQRQQDPPCQTELSSIQKRLGVKKLLGQYIPQCDEDGYYKPMQCHGSAGQCW 1312
SNNEWCYCFQRQQDPPCQTELS+IQKR GVKKLLGQYIP CDEDGYYKP QCHGS GQCW
Sbjct: 181 SNNEWCYCFQRQQDPPCQTELSNIQKRQGVKKLLGQYIPLCDEDGYYKPTQCHGSVGQCW 240
Query: 1313 CVDRYGNEVVGSRTDGVADCAADFEISGDFASGDF 1417
CVDRYGNEV+GSR +GVADCA DFEISGDFASGDF
Sbjct: 241 CVDRYGNEVMGSRINGVADCAIDFEISGDFASGDF 275
>ref|NP_001191287.1| testican-3 isoform 9 [Homo sapiens].
Length = 313
Score = 488 bits (1257), Expect = e-138
Identities = 225/280 (80%), Positives = 242/280 (86%)
Frame = +2
Query: 332 GRPAGGSFLDDKQWLSTVSQYDREAGQWNRFRDDDYFRTWSPGRAFDQALDPAKDPCLNM 511
GR GG+FLDDKQWL+T+SQYD+E GQWN+FRDDDYFRTWSPG+ FDQALDPAKDPCL M
Sbjct: 31 GRSDGGNFLDDKQWLTTISQYDKEVGQWNKFRDDDYFRTWSPGKPFDQALDPAKDPCLKM 90
Query: 512 KCGRHEVCIVQGSGTAVCIGQRRLAHSVKDAGAGHKQRRGSPPSTCRQCLGVSMSPVCGS 691
KC RH+VCI Q S TAVCI RRL H +K+AG H+Q RG STC+QC V SPVCGS
Sbjct: 91 KCSRHKVCIAQDSQTAVCISHRRLTHRMKEAGVDHRQWRGPILSTCKQCPVVYPSPVCGS 150
Query: 692 DGHAYSSQCKLEYQACVLGKQISVRCEGHCPCPSDTTRSSSGNVKRVCTSLEFREVSTRL 871
DGH YS QCKLEYQACVLGKQISV+CEGHCPCPSD S+S NVKR C+ LEFREV+ RL
Sbjct: 151 DGHTYSFQCKLEYQACVLGKQISVKCEGHCPCPSDKPTSTSRNVKRACSDLEFREVANRL 210
Query: 872 RDWFKALHESGSQNKKAKGSLRPERSRFDTSILPICKDSLGWMFNRLDTNYDLLLDQSEL 1051
RDWFKALHESGSQNKK K LRPERSRFDTSILPICKDSLGWMFNRLDTNYDLLLDQSEL
Sbjct: 211 RDWFKALHESGSQNKKTKTLLRPERSRFDTSILPICKDSLGWMFNRLDTNYDLLLDQSEL 270
Query: 1052 GSIYLDKNEQCTEAFFNSCDTYRDRSISNNEWCYCFQRQQ 1171
SIYLDKNEQCT+AFFNSCDTY+D ISNNEWCYCFQRQQ
Sbjct: 271 RSIYLDKNEQCTKAFFNSCDTYKDSLISNNEWCYCFQRQQ 310
>ref|NP_001191288.1| testican-3 isoform 10 [Homo sapiens].
Length = 316
Score = 483 bits (1243), Expect = e-136
Identities = 225/283 (79%), Positives = 242/283 (85%), Gaps = 3/283 (1%)
Frame = +2
Query: 332 GRPAGGSFLDDKQWLSTVSQYDREAGQWNRFRD---DDYFRTWSPGRAFDQALDPAKDPC 502
GR GG+FLDDKQWL+T+SQYD+E GQWN+FRD DDYFRTWSPG+ FDQALDPAKDPC
Sbjct: 31 GRSDGGNFLDDKQWLTTISQYDKEVGQWNKFRDEVEDDYFRTWSPGKPFDQALDPAKDPC 90
Query: 503 LNMKCGRHEVCIVQGSGTAVCIGQRRLAHSVKDAGAGHKQRRGSPPSTCRQCLGVSMSPV 682
L MKC RH+VCI Q S TAVCI RRL H +K+AG H+Q RG STC+QC V SPV
Sbjct: 91 LKMKCSRHKVCIAQDSQTAVCISHRRLTHRMKEAGVDHRQWRGPILSTCKQCPVVYPSPV 150
Query: 683 CGSDGHAYSSQCKLEYQACVLGKQISVRCEGHCPCPSDTTRSSSGNVKRVCTSLEFREVS 862
CGSDGH YS QCKLEYQACVLGKQISV+CEGHCPCPSD S+S NVKR C+ LEFREV+
Sbjct: 151 CGSDGHTYSFQCKLEYQACVLGKQISVKCEGHCPCPSDKPTSTSRNVKRACSDLEFREVA 210
Query: 863 TRLRDWFKALHESGSQNKKAKGSLRPERSRFDTSILPICKDSLGWMFNRLDTNYDLLLDQ 1042
RLRDWFKALHESGSQNKK K LRPERSRFDTSILPICKDSLGWMFNRLDTNYDLLLDQ
Sbjct: 211 NRLRDWFKALHESGSQNKKTKTLLRPERSRFDTSILPICKDSLGWMFNRLDTNYDLLLDQ 270
Query: 1043 SELGSIYLDKNEQCTEAFFNSCDTYRDRSISNNEWCYCFQRQQ 1171
SEL SIYLDKNEQCT+AFFNSCDTY+D ISNNEWCYCFQRQQ
Sbjct: 271 SELRSIYLDKNEQCTKAFFNSCDTYKDSLISNNEWCYCFQRQQ 313
>ref|NP_004589.1| testican-1 precursor [Homo sapiens].
Length = 439
Score = 421 bits (1083), Expect = e-117
Identities = 195/361 (54%), Positives = 244/361 (67%), Gaps = 3/361 (0%)
Frame = +2
Query: 338 PAGGSFLDDKQWLSTVSQYDREAGQWNRFRDDDYFRTWSPGRAFDQALDPAKDPCLNMKC 517
P G+FLD+ QWLSTVSQYDR+ WNRFRDDDYFR W+P + FDQALDP+KDPCL +KC
Sbjct: 33 PNHGNFLDNDQWLSTVSQYDRDK-YWNRFRDDDYFRNWNPNKPFDQALDPSKDPCLKVKC 91
Query: 518 GRHEVCIVQGSGTAVCIGQRRLAHSVKDAGAGHKQRRGSPPST---CRQCLGVSMSPVCG 688
H+VC+ Q TA+C+ ++ L K K G PS C+ C + VCG
Sbjct: 92 SPHKVCVTQDYQTALCVSRKHLLPRQKKGNVAQKHWVG--PSNLVKCKPCPVAQSAMVCG 149
Query: 689 SDGHAYSSQCKLEYQACVLGKQISVRCEGHCPCPSDTTRSSSGNVKRVCTSLEFREVSTR 868
SDGH+Y+S+CKLE+ AC GK ++ C+G CPC + + CT E R +++R
Sbjct: 150 SDGHSYTSKCKLEFHACSTGKSLATLCDGPCPCLPEPEPPKHKAERSACTDKELRNLASR 209
Query: 869 LRDWFKALHESGSQNKKAKGSLRPERSRFDTSILPICKDSLGWMFNRLDTNYDLLLDQSE 1048
L+DWF ALHE ++ K S + RFDTSILPICKDSLGWMFN+LD NYDLLLD SE
Sbjct: 210 LKDWFGALHEDANRVIKPTSS-NTAQGRFDTSILPICKDSLGWMFNKLDMNYDLLLDPSE 268
Query: 1049 LGSIYLDKNEQCTEAFFNSCDTYRDRSISNNEWCYCFQRQQDPPCQTELSSIQKRLGVKK 1228
+ +IYLDK E C + FNSCD+++D +SNNEWCYCFQ+ PCQ E++ IQK K
Sbjct: 269 INAIYLDKYEPCIKPLFNSCDSFKDGKLSNNEWCYCFQKPGGLPCQNEMNRIQKLSKGKS 328
Query: 1229 LLGQYIPQCDEDGYYKPMQCHGSAGQCWCVDRYGNEVVGSRTDGVADCAADFEISGDFAS 1408
LLG +IP+C+E+GYYK QCHGS GQCWCVD+YGNE+ GSR G C + E SGDF S
Sbjct: 329 LLGAFIPRCNEEGYYKATQCHGSTGQCWCVDKYGNELAGSRKQGAVSCEEEQETSGDFGS 388
Query: 1409 G 1411
G
Sbjct: 389 G 389
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 75,251,131
Number of extensions: 2097907
Number of successful extensions: 10389
Number of sequences better than 1.0e-05: 25
Number of HSP's gapped: 10275
Number of HSP's successfully gapped: 29
Length of query: 651
Length of database: 18,297,164
Length adjustment: 109
Effective length of query: 542
Effective length of database: 14,704,088
Effective search space: 7969615696
Effective search space used: 7969615696
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= OVR01_0021_B09
(1955 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001068968.1| testican-1 [Bos taurus]. 416 e-116
Alignment gi|NP_001094585.1| testican-2 [Bos taurus]. 377 e-104
Alignment gi|NP_001029474.1| SPARC-like protein 1 [Bos taurus]. 68 3e-11
Alignment gi|NP_001094625.1| nidogen-1 [Bos taurus]. 65 3e-10
Alignment gi|NP_001095535.1| nidogen-2 [Bos taurus]. 62 1e-09
Alignment gi|NP_776889.1| SPARC [Bos taurus]. 59 2e-08
Alignment gi|NP_001035585.1| insulin-like growth factor-binding protein 6... 56 1e-07
Alignment gi|NP_776308.1| thyroglobulin precursor [Bos taurus]. 56 1e-07
Alignment gi|NP_001017950.1| follistatin-related protein 1 precursor [Bos... 55 2e-07
Alignment gi|XP_001254149.2| PREDICTED: follistatin-like 1, partial [Bos ... 55 2e-07
>ref|NP_001068968.1| testican-1 [Bos taurus].
Length = 442
Score = 416 bits (1070), Expect = e-116
Identities = 194/364 (53%), Positives = 244/364 (67%), Gaps = 6/364 (1%)
Frame = +2
Query: 338 PAGGSFLDDKQWLSTVSQYDREAGQWNRFRD---DDYFRTWSPGRAFDQALDPAKDPCLN 508
P G+FLD+ QWLSTVS+Y+R+ WNRFRD DDYFR W+P + FDQALDPAKDPCL
Sbjct: 33 PNNGNFLDNDQWLSTVSEYERDK-YWNRFRDEVEDDYFRNWNPNKPFDQALDPAKDPCLK 91
Query: 509 MKCGRHEVCIVQGSGTAVCIGQRRLAHSVKDAGAGHKQRRGSPPST---CRQCLGVSMSP 679
+KC H+VC+ Q TA+C+ ++ L K HK G PS C+ C +
Sbjct: 92 VKCSPHKVCVTQDYQTALCVSRKHLLPRQKKGTVVHKHWVG--PSNLVKCKPCPAAQSAM 149
Query: 680 VCGSDGHAYSSQCKLEYQACVLGKQISVRCEGHCPCPSDTTRSSSGNVKRVCTSLEFREV 859
VCGSDGH Y+S+CKLE+ AC G+ ++ C+G CPC + K CT E R +
Sbjct: 150 VCGSDGHTYTSKCKLEFHACSTGRSLTTLCDGPCPCLPEPEPPKHKAEKNACTDKELRNL 209
Query: 860 STRLRDWFKALHESGSQNKKAKGSLRPERSRFDTSILPICKDSLGWMFNRLDTNYDLLLD 1039
++RL+DWF ALHE ++ S + RFDTSILPICKDSLGWMFN+LD NYDLLLD
Sbjct: 210 ASRLKDWFGALHEDANRVINPTSS-ETAQGRFDTSILPICKDSLGWMFNKLDMNYDLLLD 268
Query: 1040 QSELGSIYLDKNEQCTEAFFNSCDTYRDRSISNNEWCYCFQRQQDPPCQTELSSIQKRLG 1219
SE+ +IYLDK E C + FNSCD+++D +SNNEWCYCFQ+ PCQ E++ IQK
Sbjct: 269 HSEINAIYLDKYEPCIKPLFNSCDSFKDGKLSNNEWCYCFQKPGGLPCQNEMNRIQKLSK 328
Query: 1220 VKKLLGQYIPQCDEDGYYKPMQCHGSAGQCWCVDRYGNEVVGSRTDGVADCAADFEISGD 1399
K LLG +IP+C+E+GYYK QCHGS GQCWCVD+YGNE+ GSR G +C + E SGD
Sbjct: 329 GKSLLGAFIPRCNEEGYYKATQCHGSTGQCWCVDKYGNELAGSRKQGAVNCEEEQETSGD 388
Query: 1400 FASG 1411
F SG
Sbjct: 389 FGSG 392
>ref|NP_001094585.1| testican-2 [Bos taurus].
Length = 424
Score = 377 bits (968), Expect = e-104
Identities = 177/359 (49%), Positives = 233/359 (64%), Gaps = 4/359 (1%)
Frame = +2
Query: 347 GSFLDDKQWLSTVSQYDREAGQWNRFRD---DDYFRTWSPGRAFDQALDPAKDPCLNMKC 517
G+F++D+QWLS++SQY + WNRFRD DDY ++W + D+ALD KDPC +KC
Sbjct: 36 GNFMEDEQWLSSISQYSGKIKHWNRFRDEVEDDYIKSWEDNQQGDEALDTTKDPCQKVKC 95
Query: 518 GRHEVCIVQGSGTAVCIGQRRLAHSVKDAGAGHKQRRGSPPSTCRQCLGVSMSPVCGSDG 697
RH+VCI QG A+CI +++L H +K + G+ + C+ C ++ VCGSDG
Sbjct: 96 SRHKVCIAQGYQRAMCISRKKLEHRIKQPAV---KLHGNKDTICKPCHMAHLASVCGSDG 152
Query: 698 HAYSSQCKLEYQACVLGKQISVRCEGHCPCPSDTTRSSSGNVK-RVCTSLEFREVSTRLR 874
H YSS CKLE QAC+ KQ++VRCEG CPCP++ +S+ + K CT + ++ RLR
Sbjct: 153 HTYSSVCKLEQQACLSSKQLTVRCEGPCPCPTEQAATSTSDSKPETCTGQDLADLGDRLR 212
Query: 875 DWFKALHESGSQNKKAKGSLRPERSRFDTSILPICKDSLGWMFNRLDTNYDLLLDQSELG 1054
DWF+ LHE+ QN A P S D S+ CKDS+GWMF++LDT+ DL LDQ+EL
Sbjct: 213 DWFQLLHENSKQNGSANSGASPA-SGLDKSLGASCKDSIGWMFSKLDTSADLFLDQTELA 271
Query: 1055 SIYLDKNEQCTEAFFNSCDTYRDRSISNNEWCYCFQRQQDPPCQTELSSIQKRLGVKKLL 1234
+I LDK E C FFNSCDTY+D +S EWC+CF R++ PPC EL IQ + KK
Sbjct: 272 AINLDKYEVCIRPFFNSCDTYKDGRVSTAEWCFCFWREK-PPCLAELERIQIQEAAKKKP 330
Query: 1235 GQYIPQCDEDGYYKPMQCHGSAGQCWCVDRYGNEVVGSRTDGVADCAADFEISGDFASG 1411
G +IP CDEDGYY+ MQC S+G CWCVD+ G E+ G+RT G DC SGDF SG
Sbjct: 331 GIFIPSCDEDGYYRKMQCDQSSGDCWCVDQLGLELTGTRTHGSPDCDDIVGFSGDFGSG 389
>ref|NP_001029474.1| SPARC-like protein 1 [Bos taurus].
Length = 654
Score = 67.8 bits (164), Expect = 3e-11
Identities = 63/260 (24%), Positives = 98/260 (37%), Gaps = 33/260 (12%)
Frame = +2
Query: 494 DPCLNMKCGRHEVCIVQGSGTAVCIGQRRLAHSVKDAGAGHKQRRGSPPSTCRQCLGVSM 673
D CL+ +C R +C G C+ Q P++C +
Sbjct: 421 DSCLSFQCKRGHICKADQHGKPYCVCQ--------------------DPASCPPTK--LL 458
Query: 674 SPVCGSDGHAYSSQCKLEYQACVL-----GKQISVRCEGHCPCPSDTTRSSSGNVKRVCT 838
VCG+D Y+S C L C + G Q+ + G C CT
Sbjct: 459 DQVCGTDNQTYASSCHLFATKCRMERTKKGHQLHLDYFGAC------------KTIPACT 506
Query: 839 SLEFREVSTRLRDWFKAL---------HESGSQNKKAKGSLRP---ERSRF---DTSILP 973
E + R+RDW K + SG N+K + ++ + R D SI
Sbjct: 507 DFEVTQFPLRMRDWLKNILVQLYEPNPEHSGYLNEKQRNKVKKIYLDEKRLLAGDHSIDL 566
Query: 974 ICKD----------SLGWMFNRLDTN-YDLLLDQSELGSIY--LDKNEQCTEAFFNSCDT 1114
+ +D + W F+ LD + D +L SEL + L E C FF CD
Sbjct: 567 LLRDFKKNYHMYVYPVHWQFSELDQHPRDRVLTHSELAPLRASLVPMEHCITRFFEECDP 626
Query: 1115 YRDRSISNNEWCYCFQRQQD 1174
+D+ I+ EW +CF+ +++
Sbjct: 627 NKDKHITLQEWGHCFEIKEE 646
>ref|NP_001094625.1| nidogen-1 [Bos taurus].
Length = 1241
Score = 64.7 bits (156), Expect = 3e-10
Identities = 25/40 (62%), Positives = 29/40 (72%)
Frame = +2
Query: 1235 GQYIPQCDEDGYYKPMQCHGSAGQCWCVDRYGNEVVGSRT 1354
G ++P+CDE G Y P QCH S G CWCVDR G EV G+RT
Sbjct: 866 GLFVPECDEHGQYVPTQCHSSTGYCWCVDRDGREVQGTRT 905
>ref|NP_001095535.1| nidogen-2 [Bos taurus].
Length = 1305
Score = 62.4 bits (150), Expect = 1e-09
Identities = 25/58 (43%), Positives = 37/58 (63%)
Frame = +2
Query: 1181 CQTELSSIQKRLGVKKLLGQYIPQCDEDGYYKPMQCHGSAGQCWCVDRYGNEVVGSRT 1354
C+ S+ + G QY+PQCD+ G++ P+QCHG + CWCVD+ G EV G+R+
Sbjct: 950 CERWRESLLEHYGGTPRDDQYVPQCDDLGHFTPLQCHGKSDFCWCVDQDGREVQGTRS 1007
>ref|NP_776889.1| SPARC [Bos taurus].
Length = 304
Score = 58.9 bits (141), Expect = 2e-08
Identities = 60/257 (23%), Positives = 92/257 (35%), Gaps = 33/257 (12%)
Frame = +2
Query: 488 AKDPCLNMKCGRHEVCIVQGSGTAVCIGQRRLAHSVKDAGAGHKQRRGSPPSTCRQCLGV 667
A++PC N C +VC + + T +C+ Q P++C +G
Sbjct: 68 AENPCQNHHCKHGKVCELDENNTPMCVCQ--------------------DPTSCPAPIG- 106
Query: 668 SMSPVCGSDGHAYSSQCKLEYQACVL-----GKQISVRCEGHCPCPSDTTRSSSGNVKRV 832
VC +D + S C C L G ++ + G C
Sbjct: 107 EFEKVCSNDNKTFDSSCHFFATKCTLEGTKKGHKLHLDYIGPCKYIPP------------ 154
Query: 833 CTSLEFREVSTRLRDWFK----ALHESGSQN-----------KKAKGSLRPERSRFDTSI 967
C E E R+RDW K L+E N KK + + + D +
Sbjct: 155 CLDSELTEFPLRMRDWLKNVLVTLYERDEDNNLLTEKQKLRVKKIHENEKRLEAGCDHPV 214
Query: 968 LPICKD----------SLGWMFNRLDTN-YDLLLDQSELGSIY--LDKNEQCTEAFFNSC 1108
+ +D + W F +LD + D L +EL + L E CT FF +C
Sbjct: 215 ELLARDFEKNYNMYIFPVHWQFGQLDQHPIDGYLSHTELAPLRAPLIPMEHCTTRFFETC 274
Query: 1109 DTYRDRSISNNEWCYCF 1159
D D+ I+ +EW CF
Sbjct: 275 DLDNDKYIALDEWAGCF 291
>ref|NP_001035585.1| insulin-like growth factor-binding protein 6 precursor [Bos taurus].
Length = 237
Score = 56.2 bits (134), Expect = 1e-07
Identities = 26/68 (38%), Positives = 37/68 (54%), Gaps = 7/68 (10%)
Frame = +2
Query: 1178 PCQTELSSIQKRLGVKKLLGQ---YIPQCDEDGYYKPMQCHGSAGQ----CWCVDRYGNE 1336
PC+ L S+ ++L + G Y+P CD+ G+Y+ QC S GQ CWCV+R G
Sbjct: 158 PCRKHLDSVLQQLQTEVFRGAHTLYVPNCDQRGFYRKRQCRSSQGQRRGPCWCVERMGQP 217
Query: 1337 VVGSRTDG 1360
+ GS G
Sbjct: 218 LPGSSEGG 225
>ref|NP_776308.1| thyroglobulin precursor [Bos taurus].
Length = 2769
Score = 55.8 bits (133), Expect = 1e-07
Identities = 28/71 (39%), Positives = 34/71 (47%), Gaps = 1/71 (1%)
Frame = +2
Query: 1181 CQTELSSIQKRLGVKKLLGQYIPQCDEDGYYKPMQCHGSAGQCWCVDRYGNEVVGSRTDG 1360
CQ + I + Y+PQC + G Y P+QC QCWCVD G EV G+R G
Sbjct: 96 CQLQKQQILLSSYINSTATSYLPQCQDSGDYSPVQCDLRRRQCWCVDAEGMEVYGTRQQG 155
Query: 1361 -VADCAADFEI 1390
A C EI
Sbjct: 156 RPARCPRSCEI 166
Score = 53.5 bits (127), Expect = 7e-07
Identities = 29/76 (38%), Positives = 40/76 (52%)
Frame = +2
Query: 1133 SNNEWCYCFQRQQDPPCQTELSSIQKRLGVKKLLGQYIPQCDEDGYYKPMQCHGSAGQCW 1312
S N + Y Q PC+ + ++R +K+ Y+PQC EDG ++ +QC CW
Sbjct: 18 SANIFEYQVDAQPLRPCELQ----RERAFLKR--EDYVPQCAEDGSFQTVQCGKDGASCW 71
Query: 1313 CVDRYGNEVVGSRTDG 1360
CVD G EV GSR G
Sbjct: 72 CVDADGREVPGSRQPG 87
Score = 51.2 bits (121), Expect = 3e-06
Identities = 20/38 (52%), Positives = 25/38 (65%)
Frame = +2
Query: 1241 YIPQCDEDGYYKPMQCHGSAGQCWCVDRYGNEVVGSRT 1354
Y+PQCD G ++P+QCH + G CWCVD G V S T
Sbjct: 1027 YLPQCDAFGGWEPVQCHAATGHCWCVDGKGEYVPTSLT 1064
>ref|NP_001017950.1| follistatin-related protein 1 precursor [Bos taurus].
Length = 307
Score = 55.5 bits (132), Expect = 2e-07
Identities = 55/205 (26%), Positives = 83/205 (40%), Gaps = 13/205 (6%)
Frame = +2
Query: 605 GAGHK---QRRGSPPSTCRQCLGVSMSPVCGSDGHAYSSQCKLEYQACVLGKQISVRCEG 775
GAG + +G P C + PVCGS+G Y + C+L AC+ G +I V +G
Sbjct: 36 GAGRECAVTEKGEPTCLCIEQCKPHKRPVCGSNGKTYLNHCELHRDACLTGSKIQVDYDG 95
Query: 776 HCPCPSDTTRSSSGNVKRVCTSLEFREVSTRLRDWFKALHESGSQNKKAKGSLRPERSRF 955
HC + S+S VC E+ R+ W +A E +KGS E
Sbjct: 96 HCKEKKSVSPSAS---PVVCYQSNRDELRRRIIQWLEA--EIIPDGWFSKGSNYSE---- 146
Query: 956 DTSILPICKDSLGWMFNRLDTNYDL-LLDQSELG---SIYLDKNEQ------CTEAFFNS 1105
IL + +RLD++ L ++Q+E + Y D+ C +A
Sbjct: 147 ---ILDKYFKNFDNGDSRLDSSEFLKFVEQNETAINITTYADQENNKLLRGLCVDALIEL 203
Query: 1106 CDTYRDRSISNNEWCYCFQRQQDPP 1180
D D +S E+ C +PP
Sbjct: 204 SDENADWKLSFQEFLKCLNPSFNPP 228
>ref|XP_001254149.2| PREDICTED: follistatin-like 1, partial [Bos taurus].
Length = 317
Score = 55.5 bits (132), Expect = 2e-07
Identities = 55/205 (26%), Positives = 83/205 (40%), Gaps = 13/205 (6%)
Frame = +2
Query: 605 GAGHK---QRRGSPPSTCRQCLGVSMSPVCGSDGHAYSSQCKLEYQACVLGKQISVRCEG 775
GAG + +G P C + PVCGS+G Y + C+L AC+ G +I V +G
Sbjct: 16 GAGRECAVTEKGEPTCLCIEQCKPHKRPVCGSNGKTYLNHCELHRDACLTGSKIQVDYDG 75
Query: 776 HCPCPSDTTRSSSGNVKRVCTSLEFREVSTRLRDWFKALHESGSQNKKAKGSLRPERSRF 955
HC + S+S VC E+ R+ W +A E +KGS E
Sbjct: 76 HCKEKKSVSPSAS---PVVCYQSNRDELRRRIIQWLEA--EIIPDGWFSKGSNYSE---- 126
Query: 956 DTSILPICKDSLGWMFNRLDTNYDL-LLDQSELG---SIYLDKNEQ------CTEAFFNS 1105
IL + +RLD++ L ++Q+E + Y D+ C +A
Sbjct: 127 ---ILDKYFKNFDNGDSRLDSSEFLKFVEQNETAINITTYADQENNKLLRGLCVDALIEL 183
Query: 1106 CDTYRDRSISNNEWCYCFQRQQDPP 1180
D D +S E+ C +PP
Sbjct: 184 SDENADWKLSFQEFLKCLNPSFNPP 208
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 74,220,294
Number of extensions: 2181874
Number of successful extensions: 11081
Number of sequences better than 1.0e-05: 15
Number of HSP's gapped: 10975
Number of HSP's successfully gapped: 19
Length of query: 651
Length of database: 17,681,374
Length adjustment: 109
Effective length of query: 542
Effective length of database: 14,074,782
Effective search space: 7628531844
Effective search space used: 7628531844
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= OVR01_0021_B09
(1955 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_076178.1| testican-3 precursor [Mus musculus]. 638 0.0
Alignment gi|NP_001159935.1| testican-1 isoform 3 precursor [Mus musculus]. 424 e-118
Alignment gi|NP_033288.2| testican-1 isoform 1 precursor [Mus musculus]. 419 e-117
Alignment gi|NP_001159938.1| testican-1 isoform 2 precursor [Mus musculus]. 414 e-115
Alignment gi|NP_443720.1| testican-2 precursor [Mus musculus]. 370 e-102
Alignment gi|NP_001159937.1| testican-1 isoform 5 precursor [Mus musculus]. 337 2e-92
Alignment gi|NP_001159936.1| testican-1 isoform 4 precursor [Mus musculus]. 332 6e-91
Alignment gi|NP_035047.2| nidogen-1 precursor [Mus musculus]. 67 5e-11
Alignment gi|NP_032721.2| nidogen-2 precursor [Mus musculus]. 65 1e-10
Alignment gi|NP_034227.3| SPARC-like protein 1 precursor [Mus musculus]. 64 6e-10
>ref|NP_076178.1| testican-3 precursor [Mus musculus].
Length = 436
Score = 638 bits (1646), Expect = 0.0
Identities = 291/366 (79%), Positives = 317/366 (86%), Gaps = 3/366 (0%)
Frame = +2
Query: 332 GRPAGGSFLDDKQWLSTVSQYDREAGQWNRFRD---DDYFRTWSPGRAFDQALDPAKDPC 502
GR GG+FLD+KQWL+T+SQYD+E GQWN+FRD DDYFRTW+PG+ FDQALDPAKDPC
Sbjct: 31 GRSDGGNFLDEKQWLTTISQYDKEVGQWNKFRDEVEDDYFRTWNPGKPFDQALDPAKDPC 90
Query: 503 LNMKCGRHEVCIVQGSGTAVCIGQRRLAHSVKDAGAGHKQRRGSPPSTCRQCLGVSMSPV 682
L KC RH+VCI Q + TA+CI RRL HS+K+ G HKQ RG P STC+ C SPV
Sbjct: 91 LKTKCSRHKVCITQDAQTALCISHRRLTHSMKEVGGSHKQWRGLPSSTCKPCPIAYASPV 150
Query: 683 CGSDGHAYSSQCKLEYQACVLGKQISVRCEGHCPCPSDTTRSSSGNVKRVCTSLEFREVS 862
CGSDGH+YSSQCKLEYQACVLGKQIS++CEG CPCPSD + + NVKR C+ LEFREV+
Sbjct: 151 CGSDGHSYSSQCKLEYQACVLGKQISIKCEGRCPCPSDKSMNIGRNVKRACSDLEFREVA 210
Query: 863 TRLRDWFKALHESGSQNKKAKGSLRPERSRFDTSILPICKDSLGWMFNRLDTNYDLLLDQ 1042
RLRDWFKALHESGSQNKK K LRPERSRFDTSILPICKDSLGWMFNRLDTNYDLLLDQ
Sbjct: 211 NRLRDWFKALHESGSQNKKTKALLRPERSRFDTSILPICKDSLGWMFNRLDTNYDLLLDQ 270
Query: 1043 SELGSIYLDKNEQCTEAFFNSCDTYRDRSISNNEWCYCFQRQQDPPCQTELSSIQKRLGV 1222
SELGSIYLDKNEQCT+AFFNSCDTY+D ISNNEWCYCFQRQQDPPC TELS+IQKR G+
Sbjct: 271 SELGSIYLDKNEQCTKAFFNSCDTYKDSLISNNEWCYCFQRQQDPPCHTELSNIQKRQGI 330
Query: 1223 KKLLGQYIPQCDEDGYYKPMQCHGSAGQCWCVDRYGNEVVGSRTDGVADCAADFEISGDF 1402
KKLLGQYIP CDEDGYYKP QCHGS GQCWCVDRYGNEVVGSR +GVADCA DFEISGDF
Sbjct: 331 KKLLGQYIPLCDEDGYYKPTQCHGSVGQCWCVDRYGNEVVGSRINGVADCAIDFEISGDF 390
Query: 1403 ASGDFR 1420
ASGDFR
Sbjct: 391 ASGDFR 396
>ref|NP_001159935.1| testican-1 isoform 3 precursor [Mus musculus].
Length = 439
Score = 424 bits (1090), Expect = e-118
Identities = 196/357 (54%), Positives = 243/357 (68%), Gaps = 3/357 (0%)
Frame = +2
Query: 350 SFLDDKQWLSTVSQYDREAGQWNRFRDDDYFRTWSPGRAFDQALDPAKDPCLNMKCGRHE 529
+FLD+ QWLSTVSQYDR+ WNRFRDDDYFR W+P + FDQALDP+KDPCL +KC H+
Sbjct: 37 NFLDNDQWLSTVSQYDRDK-YWNRFRDDDYFRNWNPNKPFDQALDPSKDPCLKVKCSPHK 95
Query: 530 VCIVQGSGTAVCIGQRRLAHSVKDAGAGHKQRRGSPPST---CRQCLGVSMSPVCGSDGH 700
VC+ Q TA+C+ ++ L K HK G PS C+ C + VCGSDGH
Sbjct: 96 VCVTQDYQTALCVSRKHLLPRQKKGNVAHKHWLG--PSNLVKCKPCPVAQSAMVCGSDGH 153
Query: 701 AYSSQCKLEYQACVLGKQISVRCEGHCPCPSDTTRSSSGNVKRVCTSLEFREVSTRLRDW 880
Y+S+CKLE+ AC GK ++ C+G CPC + K CT E R +++RL+DW
Sbjct: 154 TYTSKCKLEFHACSTGKSLNSLCDGPCPCLPEPEPLKPKAEKSACTDKELRNLASRLKDW 213
Query: 881 FKALHESGSQNKKAKGSLRPERSRFDTSILPICKDSLGWMFNRLDTNYDLLLDQSELGSI 1060
F ALHE ++ K S P + RFDTSILPICKDSLGWMFN+LD NYDLLLD SE+ +I
Sbjct: 214 FGALHEDANRVIKPTSS-DPAQGRFDTSILPICKDSLGWMFNKLDMNYDLLLDHSEINAI 272
Query: 1061 YLDKNEQCTEAFFNSCDTYRDRSISNNEWCYCFQRQQDPPCQTELSSIQKRLGVKKLLGQ 1240
YLDK E C + FNSCD+++D +SNNEWCYCFQ+ PCQ E++ IQK K LLG
Sbjct: 273 YLDKYEPCIKPLFNSCDSFKDGKLSNNEWCYCFQKPAGLPCQNEMNRIQKLSKGKSLLGA 332
Query: 1241 YIPQCDEDGYYKPMQCHGSAGQCWCVDRYGNEVVGSRTDGVADCAADFEISGDFASG 1411
+IP+C+E+GYYK QCHGS GQCWCVD+YGNE+ GSR G C + E SGDF SG
Sbjct: 333 FIPRCNEEGYYKATQCHGSTGQCWCVDKYGNELAGSRKQGTVSCEEEQETSGDFGSG 389
>ref|NP_033288.2| testican-1 isoform 1 precursor [Mus musculus].
Length = 442
Score = 419 bits (1076), Expect = e-117
Identities = 196/360 (54%), Positives = 243/360 (67%), Gaps = 6/360 (1%)
Frame = +2
Query: 350 SFLDDKQWLSTVSQYDREAGQWNRFRD---DDYFRTWSPGRAFDQALDPAKDPCLNMKCG 520
+FLD+ QWLSTVSQYDR+ WNRFRD DDYFR W+P + FDQALDP+KDPCL +KC
Sbjct: 37 NFLDNDQWLSTVSQYDRDK-YWNRFRDEVEDDYFRNWNPNKPFDQALDPSKDPCLKVKCS 95
Query: 521 RHEVCIVQGSGTAVCIGQRRLAHSVKDAGAGHKQRRGSPPST---CRQCLGVSMSPVCGS 691
H+VC+ Q TA+C+ ++ L K HK G PS C+ C + VCGS
Sbjct: 96 PHKVCVTQDYQTALCVSRKHLLPRQKKGNVAHKHWLG--PSNLVKCKPCPVAQSAMVCGS 153
Query: 692 DGHAYSSQCKLEYQACVLGKQISVRCEGHCPCPSDTTRSSSGNVKRVCTSLEFREVSTRL 871
DGH Y+S+CKLE+ AC GK ++ C+G CPC + K CT E R +++RL
Sbjct: 154 DGHTYTSKCKLEFHACSTGKSLNSLCDGPCPCLPEPEPLKPKAEKSACTDKELRNLASRL 213
Query: 872 RDWFKALHESGSQNKKAKGSLRPERSRFDTSILPICKDSLGWMFNRLDTNYDLLLDQSEL 1051
+DWF ALHE ++ K S P + RFDTSILPICKDSLGWMFN+LD NYDLLLD SE+
Sbjct: 214 KDWFGALHEDANRVIKPTSS-DPAQGRFDTSILPICKDSLGWMFNKLDMNYDLLLDHSEI 272
Query: 1052 GSIYLDKNEQCTEAFFNSCDTYRDRSISNNEWCYCFQRQQDPPCQTELSSIQKRLGVKKL 1231
+IYLDK E C + FNSCD+++D +SNNEWCYCFQ+ PCQ E++ IQK K L
Sbjct: 273 NAIYLDKYEPCIKPLFNSCDSFKDGKLSNNEWCYCFQKPAGLPCQNEMNRIQKLSKGKSL 332
Query: 1232 LGQYIPQCDEDGYYKPMQCHGSAGQCWCVDRYGNEVVGSRTDGVADCAADFEISGDFASG 1411
LG +IP+C+E+GYYK QCHGS GQCWCVD+YGNE+ GSR G C + E SGDF SG
Sbjct: 333 LGAFIPRCNEEGYYKATQCHGSTGQCWCVDKYGNELAGSRKQGTVSCEEEQETSGDFGSG 392
>ref|NP_001159938.1| testican-1 isoform 2 precursor [Mus musculus].
Length = 441
Score = 414 bits (1063), Expect = e-115
Identities = 194/360 (53%), Positives = 240/360 (66%), Gaps = 6/360 (1%)
Frame = +2
Query: 350 SFLDDKQWLSTVSQYDREAGQWNRFRD---DDYFRTWSPGRAFDQALDPAKDPCLNMKCG 520
+FLD+ QWLSTVSQYDR+ WNRFRD DDYFR W+P + FDQALDP+KDPCL +KC
Sbjct: 37 NFLDNDQWLSTVSQYDRDK-YWNRFRDEVEDDYFRNWNPNKPFDQALDPSKDPCLKVKCS 95
Query: 521 RHEVCIVQGSGTAVCIGQRRLAHSVKDAGAGHKQRRGSPPST---CRQCLGVSMSPVCGS 691
H+VC+ Q TA+C+ ++ L K HK G PS C+ C + VCGS
Sbjct: 96 PHKVCVTQDYQTALCVSRKHLLPRQKKGNVAHKHWLG--PSNLVKCKPCPVAQSAMVCGS 153
Query: 692 DGHAYSSQCKLEYQACVLGKQISVRCEGHCPCPSDTTRSSSGNVKRVCTSLEFREVSTRL 871
DGH Y+S+CKLE+ AC GK ++ C+G CPC + K CT E R +++RL
Sbjct: 154 DGHTYTSKCKLEFHACSTGKSLNSLCDGPCPCLPEPEPLKPKAEKSACTDKELRNLASRL 213
Query: 872 RDWFKALHESGSQNKKAKGSLRPERSRFDTSILPICKDSLGWMFNRLDTNYDLLLDQSEL 1051
+DWF ALHE N+ K + FDTSILPICKDSLGWMFN+LD NYDLLLD SE+
Sbjct: 214 KDWFGALHEDA--NRVIKPTSSDPAQGFDTSILPICKDSLGWMFNKLDMNYDLLLDHSEI 271
Query: 1052 GSIYLDKNEQCTEAFFNSCDTYRDRSISNNEWCYCFQRQQDPPCQTELSSIQKRLGVKKL 1231
+IYLDK E C + FNSCD+++D +SNNEWCYCFQ+ PCQ E++ IQK K L
Sbjct: 272 NAIYLDKYEPCIKPLFNSCDSFKDGKLSNNEWCYCFQKPAGLPCQNEMNRIQKLSKGKSL 331
Query: 1232 LGQYIPQCDEDGYYKPMQCHGSAGQCWCVDRYGNEVVGSRTDGVADCAADFEISGDFASG 1411
LG +IP+C+E+GYYK QCHGS GQCWCVD+YGNE+ GSR G C + E SGDF SG
Sbjct: 332 LGAFIPRCNEEGYYKATQCHGSTGQCWCVDKYGNELAGSRKQGTVSCEEEQETSGDFGSG 391
>ref|NP_443720.1| testican-2 precursor [Mus musculus].
Length = 423
Score = 370 bits (951), Expect = e-102
Identities = 173/359 (48%), Positives = 230/359 (64%), Gaps = 4/359 (1%)
Frame = +2
Query: 347 GSFLDDKQWLSTVSQYDREAGQWNRFRD---DDYFRTWSPGRAFDQALDPAKDPCLNMKC 517
G+F++D+QWLS++SQY + WNRFRD DDY ++W + D+ALD KDPC +KC
Sbjct: 36 GNFMEDEQWLSSISQYSGKIKHWNRFRDEVEDDYIKSWEDNQQGDEALDTTKDPCQKVKC 95
Query: 518 GRHEVCIVQGSGTAVCIGQRRLAHSVKDAGAGHKQRRGSPPSTCRQCLGVSMSPVCGSDG 697
RH+VC+ QG A+CI +++L H +K + G S C+ C ++ VCGSDG
Sbjct: 96 SRHKVCVAQGYQRAMCISRKKLEHRIKQPSL---KLHGGKDSVCKPCHMAQLASVCGSDG 152
Query: 698 HAYSSQCKLEYQACVLGKQISVRCEGHCPCPSD-TTRSSSGNVKRVCTSLEFREVSTRLR 874
H YSS CKLE QAC+ KQ++VRCEG CPCP++ +T S++ + CT + ++ RLR
Sbjct: 153 HTYSSVCKLEQQACLSSKQLAVRCEGPCPCPTEQSTASTTDSKSETCTGQDLADLGDRLR 212
Query: 875 DWFKALHESGSQNKKAKGSLRPERSRFDTSILPICKDSLGWMFNRLDTNYDLLLDQSELG 1054
DWF+ L E+ QN A + P + D S+ CKDS+GWMF++LDT+ DL LDQ+EL
Sbjct: 213 DWFQLLRENSKQNGSANSATNP--AGLDKSLGASCKDSIGWMFSKLDTSGDLFLDQTELA 270
Query: 1055 SIYLDKNEQCTEAFFNSCDTYRDRSISNNEWCYCFQRQQDPPCQTELSSIQKRLGVKKLL 1234
+I LDK E C FFNSCDTY+D +S EWC+CF R++ PPC EL Q + KK
Sbjct: 271 AINLDKYEVCIRPFFNSCDTYKDGRVSTAEWCFCFWREK-PPCLAELERTQIQEAAKKKP 329
Query: 1235 GQYIPQCDEDGYYKPMQCHGSAGQCWCVDRYGNEVVGSRTDGVADCAADFEISGDFASG 1411
G +IP CDEDGYY+ MQC S G CWCVD+ G E+ G+R G DC SGDF SG
Sbjct: 330 GVFIPSCDEDGYYRKMQCDQSRGDCWCVDQLGLELTGTRMHGTPDCDDIVGFSGDFGSG 388
>ref|NP_001159937.1| testican-1 isoform 5 precursor [Mus musculus].
Length = 364
Score = 337 bits (865), Expect = 2e-92
Identities = 160/299 (53%), Positives = 200/299 (66%), Gaps = 3/299 (1%)
Frame = +2
Query: 350 SFLDDKQWLSTVSQYDREAGQWNRFRDDDYFRTWSPGRAFDQALDPAKDPCLNMKCGRHE 529
+FLD+ QWLSTVSQYDR+ WNRFRDDDYFR W+P + FDQALDP+KDPCL +KC H+
Sbjct: 37 NFLDNDQWLSTVSQYDRDK-YWNRFRDDDYFRNWNPNKPFDQALDPSKDPCLKVKCSPHK 95
Query: 530 VCIVQGSGTAVCIGQRRLAHSVKDAGAGHKQRRGSPPST---CRQCLGVSMSPVCGSDGH 700
VC+ Q TA+C+ ++ L K HK G PS C+ C + VCGSDGH
Sbjct: 96 VCVTQDYQTALCVSRKHLLPRQKKGNVAHKHWLG--PSNLVKCKPCPVAQSAMVCGSDGH 153
Query: 701 AYSSQCKLEYQACVLGKQISVRCEGHCPCPSDTTRSSSGNVKRVCTSLEFREVSTRLRDW 880
Y+S+CKLE+ AC GK ++ C+G CPC + K CT E R +++RL+DW
Sbjct: 154 TYTSKCKLEFHACSTGKSLNSLCDGPCPCLPEPEPLKPKAEKSACTDKELRNLASRLKDW 213
Query: 881 FKALHESGSQNKKAKGSLRPERSRFDTSILPICKDSLGWMFNRLDTNYDLLLDQSELGSI 1060
F ALHE ++ K S P + RFDTSILPICKDSLGWMFN+LD NYDLLLD SE+ +I
Sbjct: 214 FGALHEDANRVIKPTSS-DPAQGRFDTSILPICKDSLGWMFNKLDMNYDLLLDHSEINAI 272
Query: 1061 YLDKNEQCTEAFFNSCDTYRDRSISNNEWCYCFQRQQDPPCQTELSSIQKRLGVKKLLG 1237
YLDK E C + FNSCD+++D +SNNEWCYCFQ+ PCQ E++ IQK K LLG
Sbjct: 273 YLDKYEPCIKPLFNSCDSFKDGKLSNNEWCYCFQKPAGLPCQNEMNRIQKLSKGKSLLG 331
>ref|NP_001159936.1| testican-1 isoform 4 precursor [Mus musculus].
Length = 367
Score = 332 bits (851), Expect = 6e-91
Identities = 160/302 (52%), Positives = 200/302 (66%), Gaps = 6/302 (1%)
Frame = +2
Query: 350 SFLDDKQWLSTVSQYDREAGQWNRFRD---DDYFRTWSPGRAFDQALDPAKDPCLNMKCG 520
+FLD+ QWLSTVSQYDR+ WNRFRD DDYFR W+P + FDQALDP+KDPCL +KC
Sbjct: 37 NFLDNDQWLSTVSQYDRDK-YWNRFRDEVEDDYFRNWNPNKPFDQALDPSKDPCLKVKCS 95
Query: 521 RHEVCIVQGSGTAVCIGQRRLAHSVKDAGAGHKQRRGSPPST---CRQCLGVSMSPVCGS 691
H+VC+ Q TA+C+ ++ L K HK G PS C+ C + VCGS
Sbjct: 96 PHKVCVTQDYQTALCVSRKHLLPRQKKGNVAHKHWLG--PSNLVKCKPCPVAQSAMVCGS 153
Query: 692 DGHAYSSQCKLEYQACVLGKQISVRCEGHCPCPSDTTRSSSGNVKRVCTSLEFREVSTRL 871
DGH Y+S+CKLE+ AC GK ++ C+G CPC + K CT E R +++RL
Sbjct: 154 DGHTYTSKCKLEFHACSTGKSLNSLCDGPCPCLPEPEPLKPKAEKSACTDKELRNLASRL 213
Query: 872 RDWFKALHESGSQNKKAKGSLRPERSRFDTSILPICKDSLGWMFNRLDTNYDLLLDQSEL 1051
+DWF ALHE ++ K S P + RFDTSILPICKDSLGWMFN+LD NYDLLLD SE+
Sbjct: 214 KDWFGALHEDANRVIKPTSS-DPAQGRFDTSILPICKDSLGWMFNKLDMNYDLLLDHSEI 272
Query: 1052 GSIYLDKNEQCTEAFFNSCDTYRDRSISNNEWCYCFQRQQDPPCQTELSSIQKRLGVKKL 1231
+IYLDK E C + FNSCD+++D +SNNEWCYCFQ+ PCQ E++ IQK K L
Sbjct: 273 NAIYLDKYEPCIKPLFNSCDSFKDGKLSNNEWCYCFQKPAGLPCQNEMNRIQKLSKGKSL 332
Query: 1232 LG 1237
LG
Sbjct: 333 LG 334
>ref|NP_035047.2| nidogen-1 precursor [Mus musculus].
Length = 1245
Score = 67.0 bits (162), Expect = 5e-11
Identities = 27/42 (64%), Positives = 31/42 (73%)
Frame = +2
Query: 1229 LLGQYIPQCDEDGYYKPMQCHGSAGQCWCVDRYGNEVVGSRT 1354
L G ++PQCDE G+Y P QCH S G CWCVDR G E+ GSRT
Sbjct: 868 LQGMFVPQCDEYGHYVPTQCHHSTGYCWCVDRDGRELEGSRT 909
>ref|NP_032721.2| nidogen-2 precursor [Mus musculus].
Length = 1403
Score = 65.5 bits (158), Expect = 1e-10
Identities = 36/89 (40%), Positives = 50/89 (56%)
Frame = +2
Query: 1088 EAFFNSCDTYRDRSISNNEWCYCFQRQQDPPCQTELSSIQKRLGVKKLLGQYIPQCDEDG 1267
+ F + DT + SIS + C QR QT+ + R+ +IPQCD+ G
Sbjct: 948 DGFHCTSDTVPEDSISGLKPCEYQQRY----AQTQHAYPGSRI--------HIPQCDDQG 995
Query: 1268 YYKPMQCHGSAGQCWCVDRYGNEVVGSRT 1354
+ P+QCHGS G CWCVDR G+EV G++T
Sbjct: 996 NFVPLQCHGSTGFCWCVDRNGHEVPGTQT 1024
Score = 60.8 bits (146), Expect = 4e-09
Identities = 24/58 (41%), Positives = 37/58 (63%)
Frame = +2
Query: 1181 CQTELSSIQKRLGVKKLLGQYIPQCDEDGYYKPMQCHGSAGQCWCVDRYGNEVVGSRT 1354
C+ S+ + G QY+PQCD+ G++ P+QCHG + CWCVD+ G E+ G+R+
Sbjct: 1047 CERWRESLLEHYGGTPRDDQYVPQCDDLGHFIPLQCHGKSDFCWCVDKDGRELQGTRS 1104
>ref|NP_034227.3| SPARC-like protein 1 precursor [Mus musculus].
Length = 650
Score = 63.5 bits (153), Expect = 6e-10
Identities = 62/253 (24%), Positives = 88/253 (34%), Gaps = 33/253 (13%)
Frame = +2
Query: 500 CLNMKCGRHEVCIVQGSGTAVCIGQRRLAHSVKDAGAGHKQRRGSPPSTCRQCLGVSMSP 679
C N +C R +C G C+ Q P TC +
Sbjct: 419 CTNFQCKRGHICKTDPQGKPHCVCQ--------------------DPETCPPAK--ILDQ 456
Query: 680 VCGSDGHAYSSQCKLEYQACVL-----GKQISVRCEGHCPCPSDTTRSSSGNVKRVCTSL 844
CG+D Y+S C L C L G Q+ + G C CT
Sbjct: 457 ACGTDNQTYASSCHLFATKCRLEGTKKGHQLQLDYFGACKSIP------------ACTDF 504
Query: 845 EFREVSTRLRDWFKAL---------HESGSQNKKAKGSLRP---ERSRF---DTSILPIC 979
E + R+RDW K + G N+K + ++ + R D I +
Sbjct: 505 EVAQFPLRMRDWLKNILMQLYEPNPKHGGYLNEKQRSKVKKIYLDEKRLLAGDHPIELLL 564
Query: 980 KD----------SLGWMFNRLDTN-YDLLLDQSELGSIY--LDKNEQCTEAFFNSCDTYR 1120
+D + W FN LD + D +L SEL + L E C FF CD +
Sbjct: 565 RDFKKNYHMYVYPVHWQFNELDQHPADRILTHSELAPLRASLVPMEHCITRFFEECDPNK 624
Query: 1121 DRSISNNEWCYCF 1159
D+ I+ EW +CF
Sbjct: 625 DKHITLKEWGHCF 637
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 63,742,542
Number of extensions: 1760287
Number of successful extensions: 8274
Number of sequences better than 1.0e-05: 17
Number of HSP's gapped: 8136
Number of HSP's successfully gapped: 22
Length of query: 651
Length of database: 15,617,559
Length adjustment: 108
Effective length of query: 543
Effective length of database: 12,373,671
Effective search space: 6718903353
Effective search space used: 6718903353
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= OVR01_0021_B09
(1955 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_539793.2| PREDICTED: similar to Testican-3 precursor (SPA... 490 e-138
Alignment gi|XP_546155.2| PREDICTED: similar to Testican-2 precursor (SPA... 369 e-102
Alignment gi|XP_850525.1| PREDICTED: similar to Testican-2 precursor (SPA... 363 e-100
Alignment gi|XP_531914.2| PREDICTED: similar to Testican-1 precursor (SPO... 358 1e-98
Alignment gi|XP_546076.2| PREDICTED: similar to Nidogen precursor (Entact... 70 1e-11
Alignment gi|XP_856536.1| PREDICTED: similar to Nidogen precursor (Entact... 70 1e-11
Alignment gi|XP_860591.1| PREDICTED: similar to SPARC-like protein 1 prec... 69 2e-11
Alignment gi|XP_535648.2| PREDICTED: similar to SPARC-like protein 1 prec... 69 2e-11
Alignment gi|XP_850045.1| PREDICTED: similar to SPARC-like protein 1 prec... 69 2e-11
Alignment gi|XP_860498.1| PREDICTED: similar to SPARC-like protein 1 prec... 69 2e-11
>ref|XP_539793.2| PREDICTED: similar to Testican-3 precursor (SPARC/osteonectin, CWCV,
and Kazal-like domains proteoglycan 3) [Canis
familiaris].
Length = 443
Score = 490 bits (1261), Expect = e-138
Identities = 226/275 (82%), Positives = 237/275 (86%)
Frame = +2
Query: 593 VKDAGAGHKQRRGSPPSTCRQCLGVSMSPVCGSDGHAYSSQCKLEYQACVLGKQISVRCE 772
+KDAG GHKQ RG STC+QC +PVCGSDGH YSSQCKLEYQACVLGKQ+SV CE
Sbjct: 128 MKDAGVGHKQWRGPVSSTCKQCPVAYTNPVCGSDGHTYSSQCKLEYQACVLGKQLSVNCE 187
Query: 773 GHCPCPSDTTRSSSGNVKRVCTSLEFREVSTRLRDWFKALHESGSQNKKAKGSLRPERSR 952
G CPCP D S VKR C+ LEFREV+ RLRDWFKALHESGSQNKK K LRPERSR
Sbjct: 188 GRCPCPPDKPTGPSRRVKRACSDLEFREVANRLRDWFKALHESGSQNKKTKALLRPERSR 247
Query: 953 FDTSILPICKDSLGWMFNRLDTNYDLLLDQSELGSIYLDKNEQCTEAFFNSCDTYRDRSI 1132
FDTSILPICKDSLGWMFNRLDTNYDLLLDQSELGSIYLDKNEQCT+AFFNSCDTY+D I
Sbjct: 248 FDTSILPICKDSLGWMFNRLDTNYDLLLDQSELGSIYLDKNEQCTKAFFNSCDTYKDSLI 307
Query: 1133 SNNEWCYCFQRQQDPPCQTELSSIQKRLGVKKLLGQYIPQCDEDGYYKPMQCHGSAGQCW 1312
SNNEWCYCFQRQQDPPCQTELS+IQKR GVKKLLGQY+P CDEDGYYKP QCHG+ GQCW
Sbjct: 308 SNNEWCYCFQRQQDPPCQTELSNIQKRQGVKKLLGQYVPLCDEDGYYKPTQCHGTLGQCW 367
Query: 1313 CVDRYGNEVVGSRTDGVADCAADFEISGDFASGDF 1417
CVDRYGNEV GSR GV DCA DFEISGDFASGDF
Sbjct: 368 CVDRYGNEVRGSRPSGVPDCAIDFEISGDFASGDF 402
>ref|XP_546155.2| PREDICTED: similar to Testican-2 precursor (SPARC/osteonectin, CWCV,
and Kazal-like domains proteoglycan 2) isoform 1 [Canis
familiaris].
Length = 421
Score = 369 bits (946), Expect = e-102
Identities = 176/356 (49%), Positives = 231/356 (64%), Gaps = 1/356 (0%)
Frame = +2
Query: 347 GSFLDDKQWLSTVSQYDREAGQWNRFRDDDYFRTWSPGRAFDQALDPAKDPCLNMKCGRH 526
G+F++DKQWLS++SQY + RFRDDDY ++W + D+ALD KDPC +KC RH
Sbjct: 36 GNFMEDKQWLSSISQYSGKIKHGTRFRDDDYIKSWEDNQQGDEALDTTKDPCQKVKCSRH 95
Query: 527 EVCIVQGSGTAVCIGQRRLAHSVKDAGAGHKQRRGSPPSTCRQCLGVSMSPVCGSDGHAY 706
+VCI QG A+CI +++L H +K + G+ + C+ C ++ VCGSDGH Y
Sbjct: 96 KVCIAQGYQRAMCISRKKLEHRIKQPTL---KLPGNKDTICKPCHMAPLASVCGSDGHTY 152
Query: 707 SSQCKLEYQACVLGKQISVRCEGHCPCPSDTTRSSSGNVK-RVCTSLEFREVSTRLRDWF 883
SS CKLE QAC+ KQ++VRCEG CPCP++ S+ + K CT + ++ RLRDWF
Sbjct: 153 SSVCKLEQQACLSSKQLTVRCEGPCPCPTEQASLSTTDGKPETCTGQDLADLGDRLRDWF 212
Query: 884 KALHESGSQNKKAKGSLRPERSRFDTSILPICKDSLGWMFNRLDTNYDLLLDQSELGSIY 1063
+ LHE+ QN A GS S D S+ CKDS+GWMF++LDT+ DL LDQ+EL +I
Sbjct: 213 QLLHENAKQNGSA-GSGANLASGLDKSLGASCKDSIGWMFSKLDTSADLFLDQTELAAIN 271
Query: 1064 LDKNEQCTEAFFNSCDTYRDRSISNNEWCYCFQRQQDPPCQTELSSIQKRLGVKKLLGQY 1243
LDK E C FFNSCDTY+D +S EWC+CF R++ PPC EL IQ + KK G +
Sbjct: 272 LDKYEVCIRPFFNSCDTYKDGRVSTAEWCFCFWREK-PPCLAELERIQIQEASKKKPGIF 330
Query: 1244 IPQCDEDGYYKPMQCHGSAGQCWCVDRYGNEVVGSRTDGVADCAADFEISGDFASG 1411
IP CDEDGYY+ +QC S+G CWCVD+ G E+ G+RT G DC SGDF SG
Sbjct: 331 IPSCDEDGYYRKLQCDQSSGDCWCVDQLGLELTGTRTHGSPDCDDIVGFSGDFGSG 386
>ref|XP_850525.1| PREDICTED: similar to Testican-2 precursor (SPARC/osteonectin, CWCV,
and Kazal-like domains proteoglycan 2) isoform 2 [Canis
familiaris].
Length = 424
Score = 363 bits (932), Expect = e-100
Identities = 176/359 (49%), Positives = 231/359 (64%), Gaps = 4/359 (1%)
Frame = +2
Query: 347 GSFLDDKQWLSTVSQYDREAGQWNRFRD---DDYFRTWSPGRAFDQALDPAKDPCLNMKC 517
G+F++DKQWLS++SQY + RFRD DDY ++W + D+ALD KDPC +KC
Sbjct: 36 GNFMEDKQWLSSISQYSGKIKHGTRFRDEVEDDYIKSWEDNQQGDEALDTTKDPCQKVKC 95
Query: 518 GRHEVCIVQGSGTAVCIGQRRLAHSVKDAGAGHKQRRGSPPSTCRQCLGVSMSPVCGSDG 697
RH+VCI QG A+CI +++L H +K + G+ + C+ C ++ VCGSDG
Sbjct: 96 SRHKVCIAQGYQRAMCISRKKLEHRIKQPTL---KLPGNKDTICKPCHMAPLASVCGSDG 152
Query: 698 HAYSSQCKLEYQACVLGKQISVRCEGHCPCPSDTTRSSSGNVK-RVCTSLEFREVSTRLR 874
H YSS CKLE QAC+ KQ++VRCEG CPCP++ S+ + K CT + ++ RLR
Sbjct: 153 HTYSSVCKLEQQACLSSKQLTVRCEGPCPCPTEQASLSTTDGKPETCTGQDLADLGDRLR 212
Query: 875 DWFKALHESGSQNKKAKGSLRPERSRFDTSILPICKDSLGWMFNRLDTNYDLLLDQSELG 1054
DWF+ LHE+ QN A GS S D S+ CKDS+GWMF++LDT+ DL LDQ+EL
Sbjct: 213 DWFQLLHENAKQNGSA-GSGANLASGLDKSLGASCKDSIGWMFSKLDTSADLFLDQTELA 271
Query: 1055 SIYLDKNEQCTEAFFNSCDTYRDRSISNNEWCYCFQRQQDPPCQTELSSIQKRLGVKKLL 1234
+I LDK E C FFNSCDTY+D +S EWC+CF R++ PPC EL IQ + KK
Sbjct: 272 AINLDKYEVCIRPFFNSCDTYKDGRVSTAEWCFCFWREK-PPCLAELERIQIQEASKKKP 330
Query: 1235 GQYIPQCDEDGYYKPMQCHGSAGQCWCVDRYGNEVVGSRTDGVADCAADFEISGDFASG 1411
G +IP CDEDGYY+ +QC S+G CWCVD+ G E+ G+RT G DC SGDF SG
Sbjct: 331 GIFIPSCDEDGYYRKLQCDQSSGDCWCVDQLGLELTGTRTHGSPDCDDIVGFSGDFGSG 389
>ref|XP_531914.2| PREDICTED: similar to Testican-1 precursor (SPOCK protein) [Canis
familiaris].
Length = 418
Score = 358 bits (919), Expect = 1e-98
Identities = 165/315 (52%), Positives = 209/315 (66%), Gaps = 3/315 (0%)
Frame = +2
Query: 476 ALDPAKDPCLNMKCGRHEVCIVQGSGTAVCIGQRRLAHSVKDAGAGHKQRRGSPPST--- 646
ALDP+KDPCL +KC H+VC+ Q TA+C+ ++ L K +K G PS
Sbjct: 57 ALDPSKDPCLKVKCSPHKVCVTQDYQTALCVSRKHLLPRQKKGNVAYKHWVG--PSNLVK 114
Query: 647 CRQCLGVSMSPVCGSDGHAYSSQCKLEYQACVLGKQISVRCEGHCPCPSDTTRSSSGNVK 826
C+ C + VCGSDGH Y+S+CKLE+ AC GK +++ C+G CPC + S K
Sbjct: 115 CKPCPAAQSAMVCGSDGHTYTSKCKLEFHACSTGKSLNILCDGPCPCLPEPEPSKHKTEK 174
Query: 827 RVCTSLEFREVSTRLRDWFKALHESGSQNKKAKGSLRPERSRFDTSILPICKDSLGWMFN 1006
CT E R +++RL+DWF ALHE ++ K S + RFDTSILPICKDSLGWMFN
Sbjct: 175 NACTDKELRNLASRLKDWFGALHEDANRVIKPTSS-DGAQGRFDTSILPICKDSLGWMFN 233
Query: 1007 RLDTNYDLLLDQSELGSIYLDKNEQCTEAFFNSCDTYRDRSISNNEWCYCFQRQQDPPCQ 1186
+LD NYDLLLD SE+ +IYLDK E C + FNSCD+++D +SNNEWCYCFQ+ PCQ
Sbjct: 234 KLDMNYDLLLDHSEINAIYLDKYEPCIKPLFNSCDSFKDGKLSNNEWCYCFQKPGGLPCQ 293
Query: 1187 TELSSIQKRLGVKKLLGQYIPQCDEDGYYKPMQCHGSAGQCWCVDRYGNEVVGSRTDGVA 1366
E++ IQK K LLG +IP+C+E+GYYK QCHGS GQCWCVD+YGNE+ GSR G
Sbjct: 294 NEMNRIQKLSKGKSLLGAFIPRCNEEGYYKATQCHGSTGQCWCVDKYGNELAGSRKQGTV 353
Query: 1367 DCAADFEISGDFASG 1411
C + E SGDF SG
Sbjct: 354 SCEEEQETSGDFGSG 368
>ref|XP_546076.2| PREDICTED: similar to Nidogen precursor (Entactin) isoform 1 [Canis
familiaris].
Length = 1244
Score = 69.7 bits (169), Expect = 1e-11
Identities = 30/63 (47%), Positives = 39/63 (61%), Gaps = 5/63 (7%)
Frame = +2
Query: 1181 CQTELSSIQKRLGVKK-----LLGQYIPQCDEDGYYKPMQCHGSAGQCWCVDRYGNEVVG 1345
CQ E I + G+ + G ++P+CDE G+Y P QCHGS G CWCVDR G E+ G
Sbjct: 846 CQLEREHILRAAGLTDPQQPVMPGLFVPECDEHGHYTPTQCHGSTGHCWCVDRDGRELEG 905
Query: 1346 SRT 1354
+RT
Sbjct: 906 TRT 908
>ref|XP_856536.1| PREDICTED: similar to Nidogen precursor (Entactin) isoform 3 [Canis
familiaris].
Length = 1111
Score = 69.7 bits (169), Expect = 1e-11
Identities = 30/63 (47%), Positives = 39/63 (61%), Gaps = 5/63 (7%)
Frame = +2
Query: 1181 CQTELSSIQKRLGVKK-----LLGQYIPQCDEDGYYKPMQCHGSAGQCWCVDRYGNEVVG 1345
CQ E I + G+ + G ++P+CDE G+Y P QCHGS G CWCVDR G E+ G
Sbjct: 713 CQLEREHILRAAGLTDPQQPVMPGLFVPECDEHGHYTPTQCHGSTGHCWCVDRDGRELEG 772
Query: 1346 SRT 1354
+RT
Sbjct: 773 TRT 775
>ref|XP_860591.1| PREDICTED: similar to SPARC-like protein 1 precursor (High
endothelial venule protein) (Hevin) (MAST 9) isoform 4
[Canis familiaris].
Length = 656
Score = 68.6 bits (166), Expect = 2e-11
Identities = 63/255 (24%), Positives = 94/255 (36%), Gaps = 33/255 (12%)
Frame = +2
Query: 494 DPCLNMKCGRHEVCIVQGSGTAVCIGQRRLAHSVKDAGAGHKQRRGSPPSTCRQCLGVSM 673
D C+N +C R +C G C+ Q + PP+ +
Sbjct: 423 DSCMNFQCKRGHICKADQQGKPHCVCQDSVT---------------CPPTKL-------L 460
Query: 674 SPVCGSDGHAYSSQCKLEYQACVL-----GKQISVRCEGHCPCPSDTTRSSSGNVKRVCT 838
VCG+D Y+S C L C L G Q+ + G C +CT
Sbjct: 461 DQVCGTDNQTYASSCHLFATKCKLEGTKKGHQLQLDYFGACKSIP------------ICT 508
Query: 839 SLEFREVSTRLRDWFKAL---------HESGSQNKKAKGSLRP---ERSRF---DTSILP 973
E + R+RDW K + +G N+K + ++ + R D SI
Sbjct: 509 DFEVTQFPLRMRDWLKNILMQLYEQNPEHAGYLNEKQRNKVKKIYLDEKRLLAGDHSIDL 568
Query: 974 ICKD----------SLGWMFNRLDTN-YDLLLDQSELGSIY--LDKNEQCTEAFFNSCDT 1114
+ +D + W F LD + D +L SEL + L E C FF CD
Sbjct: 569 LLRDFKKNYHMYVYPVHWQFGELDQHPMDRVLTHSELAPLRASLVPMEHCITRFFEECDP 628
Query: 1115 YRDRSISNNEWCYCF 1159
+D+ I+ EW +CF
Sbjct: 629 NKDKHITLEEWGHCF 643
>ref|XP_535648.2| PREDICTED: similar to SPARC-like protein 1 precursor (High
endothelial venule protein) (Hevin) (MAST 9) isoform 1
[Canis familiaris].
Length = 667
Score = 68.6 bits (166), Expect = 2e-11
Identities = 63/255 (24%), Positives = 94/255 (36%), Gaps = 33/255 (12%)
Frame = +2
Query: 494 DPCLNMKCGRHEVCIVQGSGTAVCIGQRRLAHSVKDAGAGHKQRRGSPPSTCRQCLGVSM 673
D C+N +C R +C G C+ Q + PP+ +
Sbjct: 434 DSCMNFQCKRGHICKADQQGKPHCVCQDSVT---------------CPPTKL-------L 471
Query: 674 SPVCGSDGHAYSSQCKLEYQACVL-----GKQISVRCEGHCPCPSDTTRSSSGNVKRVCT 838
VCG+D Y+S C L C L G Q+ + G C +CT
Sbjct: 472 DQVCGTDNQTYASSCHLFATKCKLEGTKKGHQLQLDYFGACKSIP------------ICT 519
Query: 839 SLEFREVSTRLRDWFKAL---------HESGSQNKKAKGSLRP---ERSRF---DTSILP 973
E + R+RDW K + +G N+K + ++ + R D SI
Sbjct: 520 DFEVTQFPLRMRDWLKNILMQLYEQNPEHAGYLNEKQRNKVKKIYLDEKRLLAGDHSIDL 579
Query: 974 ICKD----------SLGWMFNRLDTN-YDLLLDQSELGSIY--LDKNEQCTEAFFNSCDT 1114
+ +D + W F LD + D +L SEL + L E C FF CD
Sbjct: 580 LLRDFKKNYHMYVYPVHWQFGELDQHPMDRVLTHSELAPLRASLVPMEHCITRFFEECDP 639
Query: 1115 YRDRSISNNEWCYCF 1159
+D+ I+ EW +CF
Sbjct: 640 NKDKHITLEEWGHCF 654
>ref|XP_850045.1| PREDICTED: similar to SPARC-like protein 1 precursor (High
endothelial venule protein) (Hevin) (MAST 9) isoform 2
[Canis familiaris].
Length = 667
Score = 68.6 bits (166), Expect = 2e-11
Identities = 63/255 (24%), Positives = 94/255 (36%), Gaps = 33/255 (12%)
Frame = +2
Query: 494 DPCLNMKCGRHEVCIVQGSGTAVCIGQRRLAHSVKDAGAGHKQRRGSPPSTCRQCLGVSM 673
D C+N +C R +C G C+ Q + PP+ +
Sbjct: 434 DSCMNFQCKRGHICKADQQGKPHCVCQDSVT---------------CPPTKL-------L 471
Query: 674 SPVCGSDGHAYSSQCKLEYQACVL-----GKQISVRCEGHCPCPSDTTRSSSGNVKRVCT 838
VCG+D Y+S C L C L G Q+ + G C +CT
Sbjct: 472 DQVCGTDNQTYASSCHLFATKCKLEGTKKGHQLQLDYFGACKSIP------------ICT 519
Query: 839 SLEFREVSTRLRDWFKAL---------HESGSQNKKAKGSLRP---ERSRF---DTSILP 973
E + R+RDW K + +G N+K + ++ + R D SI
Sbjct: 520 DFEVTQFPLRMRDWLKNILMQLYEQNPEHAGYLNEKQRNKVKKIYLDEKRLLAGDHSIDL 579
Query: 974 ICKD----------SLGWMFNRLDTN-YDLLLDQSELGSIY--LDKNEQCTEAFFNSCDT 1114
+ +D + W F LD + D +L SEL + L E C FF CD
Sbjct: 580 LLRDFKKNYHMYVYPVHWQFGELDQHPMDRVLTHSELAPLRASLVPMEHCITRFFEECDP 639
Query: 1115 YRDRSISNNEWCYCF 1159
+D+ I+ EW +CF
Sbjct: 640 NKDKHITLEEWGHCF 654
>ref|XP_860498.1| PREDICTED: similar to SPARC-like protein 1 precursor (High
endothelial venule protein) (Hevin) (MAST 9) isoform 3
[Canis familiaris].
Length = 609
Score = 68.6 bits (166), Expect = 2e-11
Identities = 63/255 (24%), Positives = 94/255 (36%), Gaps = 33/255 (12%)
Frame = +2
Query: 494 DPCLNMKCGRHEVCIVQGSGTAVCIGQRRLAHSVKDAGAGHKQRRGSPPSTCRQCLGVSM 673
D C+N +C R +C G C+ Q + PP+ +
Sbjct: 376 DSCMNFQCKRGHICKADQQGKPHCVCQDSVT---------------CPPTKL-------L 413
Query: 674 SPVCGSDGHAYSSQCKLEYQACVL-----GKQISVRCEGHCPCPSDTTRSSSGNVKRVCT 838
VCG+D Y+S C L C L G Q+ + G C +CT
Sbjct: 414 DQVCGTDNQTYASSCHLFATKCKLEGTKKGHQLQLDYFGACKSIP------------ICT 461
Query: 839 SLEFREVSTRLRDWFKAL---------HESGSQNKKAKGSLRP---ERSRF---DTSILP 973
E + R+RDW K + +G N+K + ++ + R D SI
Sbjct: 462 DFEVTQFPLRMRDWLKNILMQLYEQNPEHAGYLNEKQRNKVKKIYLDEKRLLAGDHSIDL 521
Query: 974 ICKD----------SLGWMFNRLDTN-YDLLLDQSELGSIY--LDKNEQCTEAFFNSCDT 1114
+ +D + W F LD + D +L SEL + L E C FF CD
Sbjct: 522 LLRDFKKNYHMYVYPVHWQFGELDQHPMDRVLTHSELAPLRASLVPMEHCITRFFEECDP 581
Query: 1115 YRDRSISNNEWCYCF 1159
+D+ I+ EW +CF
Sbjct: 582 NKDKHITLEEWGHCF 596
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 76,817,175
Number of extensions: 2149936
Number of successful extensions: 11139
Number of sequences better than 1.0e-05: 21
Number of HSP's gapped: 11024
Number of HSP's successfully gapped: 27
Length of query: 651
Length of database: 18,874,504
Length adjustment: 109
Effective length of query: 542
Effective length of database: 15,240,880
Effective search space: 8260556960
Effective search space used: 8260556960
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= OVR01_0021_B09
(1955 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_001927799.1| PREDICTED: testican-3 isoform 2 [Sus scrofa]. 781 0.0
Alignment gi|XP_001927792.1| PREDICTED: testican-3 isoform 1 [Sus scrofa]. 781 0.0
Alignment gi|XP_001927803.1| PREDICTED: testican-3 isoform 3 [Sus scrofa]. 776 0.0
Alignment gi|XP_001925956.2| PREDICTED: testican-2 [Sus scrofa]. 337 1e-92
Alignment gi|XP_003360811.1| PREDICTED: testican-2-like, partial [Sus scr... 331 1e-90
Alignment gi|XP_003354335.1| PREDICTED: testican-1-like [Sus scrofa]. 255 5e-68
Alignment gi|XP_003354339.1| PREDICTED: testican-1-like [Sus scrofa]. 181 2e-45
Alignment gi|XP_003361217.1| PREDICTED: nidogen-1, partial [Sus scrofa]. 68 2e-11
Alignment gi|NP_001090891.1| SPARC-like protein 1 [Sus scrofa]. 65 1e-10
Alignment gi|XP_001926299.1| PREDICTED: nidogen-2 [Sus scrofa]. 65 2e-10
>ref|XP_001927799.1| PREDICTED: testican-3 isoform 2 [Sus scrofa].
Length = 424
Score = 781 bits (2018), Expect = 0.0
Identities = 370/401 (92%), Positives = 370/401 (92%)
Frame = +2
Query: 329 TGRPAGGSFLDDKQWLSTVSQYDREAGQWNRFRDDDYFRTWSPGRAFDQALDPAKDPCLN 508
TGRPAGGSFLDDKQWLSTVSQYDREAGQWNRFRDDDYFRTWSPGRAFDQALDPAKDPCLN
Sbjct: 24 TGRPAGGSFLDDKQWLSTVSQYDREAGQWNRFRDDDYFRTWSPGRAFDQALDPAKDPCLN 83
Query: 509 MKCGRHEVCIVQGSGTAVCIGQRRLAHSVKDAGAGHKQRRGSPPSTCRQCLGVSMSPVCG 688
MKCGRHEVCIVQGSGTAVCIGQRRLAHSVKDAGAGHKQRRG PPSTCRQCLGVSMSPVCG
Sbjct: 84 MKCGRHEVCIVQGSGTAVCIGQRRLAHSVKDAGAGHKQRRGPPPSTCRQCLGVSMSPVCG 143
Query: 689 SDGHAYSSQCKLEYQACVLGKQISVRCEGHCPCPSDTTRSSSGNVKRVCTSLEFREVSTR 868
SDGHAYSSQCKLEYQACVLGKQISVRCEGHCPCPSDTTRSS GNVKRVCTSLEFREVSTR
Sbjct: 144 SDGHAYSSQCKLEYQACVLGKQISVRCEGHCPCPSDTTRSSRGNVKRVCTSLEFREVSTR 203
Query: 869 LRDWFKALHESGSQNKKAKGSLRPERSRFDTSILPICKDSLGWMFNRLDTNYDLLLDQSE 1048
LRDWFKALHESGSQNKKAKGSLRPERSRFDTSILPICKDSLGWMFNRLDTNYDLLLDQSE
Sbjct: 204 LRDWFKALHESGSQNKKAKGSLRPERSRFDTSILPICKDSLGWMFNRLDTNYDLLLDQSE 263
Query: 1049 LGSIYLDKNEQCTEAFFNSCDTYRDRSISNNEWCYCFQRQQDPPCQTELSSIQKRLGVKK 1228
LGSIYLDKNEQCTEAFFNSCDTYRDRSISNNEWCYCFQRQQDPPCQTELSSIQKRLGVKK
Sbjct: 264 LGSIYLDKNEQCTEAFFNSCDTYRDRSISNNEWCYCFQRQQDPPCQTELSSIQKRLGVKK 323
Query: 1229 LLGQYIPQCDEDGYYKPMQCHGSAGQCWCVDRYGNEVVGSRTDGVADCAADFEISGDFAS 1408
LLGQYIPQCDEDGYYKPMQCHGSAGQCWCVDRYGNEVVGSRTDGVADCAADFEISGDFAS
Sbjct: 324 LLGQYIPQCDEDGYYKPMQCHGSAGQCWCVDRYGNEVVGSRTDGVADCAADFEISGDFAS 383
Query: 1409 GDFRXXXXXXXXXXXXXXXXXXXXXXXXXXXXVGGDQDGYI 1531
GDFR GGDQDGYI
Sbjct: 384 GDFREWDEEEEEGDVVQDEDEMEDDDEDEGDDDGGDQDGYI 424
>ref|XP_001927792.1| PREDICTED: testican-3 isoform 1 [Sus scrofa].
Length = 424
Score = 781 bits (2018), Expect = 0.0
Identities = 370/401 (92%), Positives = 370/401 (92%)
Frame = +2
Query: 329 TGRPAGGSFLDDKQWLSTVSQYDREAGQWNRFRDDDYFRTWSPGRAFDQALDPAKDPCLN 508
TGRPAGGSFLDDKQWLSTVSQYDREAGQWNRFRDDDYFRTWSPGRAFDQALDPAKDPCLN
Sbjct: 24 TGRPAGGSFLDDKQWLSTVSQYDREAGQWNRFRDDDYFRTWSPGRAFDQALDPAKDPCLN 83
Query: 509 MKCGRHEVCIVQGSGTAVCIGQRRLAHSVKDAGAGHKQRRGSPPSTCRQCLGVSMSPVCG 688
MKCGRHEVCIVQGSGTAVCIGQRRLAHSVKDAGAGHKQRRG PPSTCRQCLGVSMSPVCG
Sbjct: 84 MKCGRHEVCIVQGSGTAVCIGQRRLAHSVKDAGAGHKQRRGPPPSTCRQCLGVSMSPVCG 143
Query: 689 SDGHAYSSQCKLEYQACVLGKQISVRCEGHCPCPSDTTRSSSGNVKRVCTSLEFREVSTR 868
SDGHAYSSQCKLEYQACVLGKQISVRCEGHCPCPSDTTRSS GNVKRVCTSLEFREVSTR
Sbjct: 144 SDGHAYSSQCKLEYQACVLGKQISVRCEGHCPCPSDTTRSSRGNVKRVCTSLEFREVSTR 203
Query: 869 LRDWFKALHESGSQNKKAKGSLRPERSRFDTSILPICKDSLGWMFNRLDTNYDLLLDQSE 1048
LRDWFKALHESGSQNKKAKGSLRPERSRFDTSILPICKDSLGWMFNRLDTNYDLLLDQSE
Sbjct: 204 LRDWFKALHESGSQNKKAKGSLRPERSRFDTSILPICKDSLGWMFNRLDTNYDLLLDQSE 263
Query: 1049 LGSIYLDKNEQCTEAFFNSCDTYRDRSISNNEWCYCFQRQQDPPCQTELSSIQKRLGVKK 1228
LGSIYLDKNEQCTEAFFNSCDTYRDRSISNNEWCYCFQRQQDPPCQTELSSIQKRLGVKK
Sbjct: 264 LGSIYLDKNEQCTEAFFNSCDTYRDRSISNNEWCYCFQRQQDPPCQTELSSIQKRLGVKK 323
Query: 1229 LLGQYIPQCDEDGYYKPMQCHGSAGQCWCVDRYGNEVVGSRTDGVADCAADFEISGDFAS 1408
LLGQYIPQCDEDGYYKPMQCHGSAGQCWCVDRYGNEVVGSRTDGVADCAADFEISGDFAS
Sbjct: 324 LLGQYIPQCDEDGYYKPMQCHGSAGQCWCVDRYGNEVVGSRTDGVADCAADFEISGDFAS 383
Query: 1409 GDFRXXXXXXXXXXXXXXXXXXXXXXXXXXXXVGGDQDGYI 1531
GDFR GGDQDGYI
Sbjct: 384 GDFREWDEEEEEGDVVQDEDEMEDDDEDEGDDDGGDQDGYI 424
>ref|XP_001927803.1| PREDICTED: testican-3 isoform 3 [Sus scrofa].
Length = 427
Score = 776 bits (2004), Expect = 0.0
Identities = 370/404 (91%), Positives = 370/404 (91%), Gaps = 3/404 (0%)
Frame = +2
Query: 329 TGRPAGGSFLDDKQWLSTVSQYDREAGQWNRFRD---DDYFRTWSPGRAFDQALDPAKDP 499
TGRPAGGSFLDDKQWLSTVSQYDREAGQWNRFRD DDYFRTWSPGRAFDQALDPAKDP
Sbjct: 24 TGRPAGGSFLDDKQWLSTVSQYDREAGQWNRFRDEVEDDYFRTWSPGRAFDQALDPAKDP 83
Query: 500 CLNMKCGRHEVCIVQGSGTAVCIGQRRLAHSVKDAGAGHKQRRGSPPSTCRQCLGVSMSP 679
CLNMKCGRHEVCIVQGSGTAVCIGQRRLAHSVKDAGAGHKQRRG PPSTCRQCLGVSMSP
Sbjct: 84 CLNMKCGRHEVCIVQGSGTAVCIGQRRLAHSVKDAGAGHKQRRGPPPSTCRQCLGVSMSP 143
Query: 680 VCGSDGHAYSSQCKLEYQACVLGKQISVRCEGHCPCPSDTTRSSSGNVKRVCTSLEFREV 859
VCGSDGHAYSSQCKLEYQACVLGKQISVRCEGHCPCPSDTTRSS GNVKRVCTSLEFREV
Sbjct: 144 VCGSDGHAYSSQCKLEYQACVLGKQISVRCEGHCPCPSDTTRSSRGNVKRVCTSLEFREV 203
Query: 860 STRLRDWFKALHESGSQNKKAKGSLRPERSRFDTSILPICKDSLGWMFNRLDTNYDLLLD 1039
STRLRDWFKALHESGSQNKKAKGSLRPERSRFDTSILPICKDSLGWMFNRLDTNYDLLLD
Sbjct: 204 STRLRDWFKALHESGSQNKKAKGSLRPERSRFDTSILPICKDSLGWMFNRLDTNYDLLLD 263
Query: 1040 QSELGSIYLDKNEQCTEAFFNSCDTYRDRSISNNEWCYCFQRQQDPPCQTELSSIQKRLG 1219
QSELGSIYLDKNEQCTEAFFNSCDTYRDRSISNNEWCYCFQRQQDPPCQTELSSIQKRLG
Sbjct: 264 QSELGSIYLDKNEQCTEAFFNSCDTYRDRSISNNEWCYCFQRQQDPPCQTELSSIQKRLG 323
Query: 1220 VKKLLGQYIPQCDEDGYYKPMQCHGSAGQCWCVDRYGNEVVGSRTDGVADCAADFEISGD 1399
VKKLLGQYIPQCDEDGYYKPMQCHGSAGQCWCVDRYGNEVVGSRTDGVADCAADFEISGD
Sbjct: 324 VKKLLGQYIPQCDEDGYYKPMQCHGSAGQCWCVDRYGNEVVGSRTDGVADCAADFEISGD 383
Query: 1400 FASGDFRXXXXXXXXXXXXXXXXXXXXXXXXXXXXVGGDQDGYI 1531
FASGDFR GGDQDGYI
Sbjct: 384 FASGDFREWDEEEEEGDVVQDEDEMEDDDEDEGDDDGGDQDGYI 427
>ref|XP_001925956.2| PREDICTED: testican-2 [Sus scrofa].
Length = 413
Score = 337 bits (865), Expect = 1e-92
Identities = 159/328 (48%), Positives = 207/328 (63%), Gaps = 1/328 (0%)
Frame = +2
Query: 431 DDYFRTWSPGRAFDQALDPAKDPCLNMKCGRHEVCIVQGSGTAVCIGQRRLAHSVKDAGA 610
DDY ++W + D+ALD KDPC +KC RH+VCI QG A+CI +++L H +K
Sbjct: 56 DDYIKSWEDNQQGDEALDTTKDPCQKVKCSRHKVCIAQGYQRAMCISRKKLEHRIKQPAL 115
Query: 611 GHKQRRGSPPSTCRQCLGVSMSPVCGSDGHAYSSQCKLEYQACVLGKQISVRCEGHCPCP 790
+ G+ + C+ C ++ VCGSDGH YSS CKLE QAC+ KQ++VRCEG CPCP
Sbjct: 116 ---KLHGNKDTACKPCHMAQLASVCGSDGHTYSSVCKLEQQACLSSKQLTVRCEGPCPCP 172
Query: 791 SDTTRSSSGNVK-RVCTSLEFREVSTRLRDWFKALHESGSQNKKAKGSLRPERSRFDTSI 967
++ +S+ + K CT + ++ RLRDWF+ LHE+ QN S D S+
Sbjct: 173 TEQAATSTADGKPETCTGQDLADLGDRLRDWFQLLHENSKQNGSVSSGANLA-SGLDKSL 231
Query: 968 LPICKDSLGWMFNRLDTNYDLLLDQSELGSIYLDKNEQCTEAFFNSCDTYRDRSISNNEW 1147
CKDS+GWMF++LDT+ DL LDQ EL +I LDK E C FFNSCDTY+D +S EW
Sbjct: 232 GASCKDSIGWMFSKLDTSADLFLDQMELAAINLDKYEVCIRPFFNSCDTYKDGRVSTAEW 291
Query: 1148 CYCFQRQQDPPCQTELSSIQKRLGVKKLLGQYIPQCDEDGYYKPMQCHGSAGQCWCVDRY 1327
C+CF R++ PPC EL IQ + KK G +IP CDEDGYY+ MQC S+G CWCVD+
Sbjct: 292 CFCFWREK-PPCLAELERIQIQEAAKKKPGVFIPSCDEDGYYRKMQCDQSSGDCWCVDQL 350
Query: 1328 GNEVVGSRTDGVADCAADFEISGDFASG 1411
G E+ G+RT G DC SGDF SG
Sbjct: 351 GLELTGTRTHGSPDCDDIVGFSGDFGSG 378
>ref|XP_003360811.1| PREDICTED: testican-2-like, partial [Sus scrofa].
Length = 351
Score = 331 bits (848), Expect = 1e-90
Identities = 157/329 (47%), Positives = 204/329 (62%), Gaps = 1/329 (0%)
Frame = +2
Query: 428 DDDYFRTWSPGRAFDQALDPAKDPCLNMKCGRHEVCIVQGSGTAVCIGQRRLAHSVKDAG 607
+DDY ++W + D+ALD KDPC +KC RH+VCI QG A+CI +++L H +K
Sbjct: 3 EDDYIKSWEDNQQGDEALDTTKDPCQKVKCSRHKVCIAQGYQRAMCISRKKLEHRIKQPA 62
Query: 608 AGHKQRRGSPPSTCRQCLGVSMSPVCGSDGHAYSSQCKLEYQACVLGKQISVRCEGHCPC 787
+ G+ + C+ C ++ VCGSDGH YSS CKLE QAC+ KQ++VRCEG CPC
Sbjct: 63 L---KLHGNKDTACKPCHMAQLASVCGSDGHTYSSVCKLEQQACLSSKQLTVRCEGPCPC 119
Query: 788 PSDTTRSSSGNVK-RVCTSLEFREVSTRLRDWFKALHESGSQNKKAKGSLRPERSRFDTS 964
P++ +S+ + K CT + ++ RLRDWF+ LHE+ QN S D S
Sbjct: 120 PTEQAATSTADGKPETCTGQDLADLGDRLRDWFQLLHENSKQNGSVSSGANLA-SGLDKS 178
Query: 965 ILPICKDSLGWMFNRLDTNYDLLLDQSELGSIYLDKNEQCTEAFFNSCDTYRDRSISNNE 1144
+ CKDS+GWMF++LDT+ DL LDQ EL +I LDK E C FFNSCDTY E
Sbjct: 179 LGASCKDSIGWMFSKLDTSADLFLDQMELAAINLDKYEVCIRPFFNSCDTYXXXXXXXAE 238
Query: 1145 WCYCFQRQQDPPCQTELSSIQKRLGVKKLLGQYIPQCDEDGYYKPMQCHGSAGQCWCVDR 1324
WC+CF R++ PPC EL IQ + KK G +IP CDEDGYY+ MQC S+G CWCVD+
Sbjct: 239 WCFCFWREK-PPCLAELERIQIQEAAKKKPGVFIPSCDEDGYYRKMQCDQSSGDCWCVDQ 297
Query: 1325 YGNEVVGSRTDGVADCAADFEISGDFASG 1411
G E+ G+RT G DC SGDF SG
Sbjct: 298 LGLELTGTRTHGSPDCDDIVGFSGDFGSG 326
>ref|XP_003354335.1| PREDICTED: testican-1-like [Sus scrofa].
Length = 258
Score = 255 bits (652), Expect = 5e-68
Identities = 115/193 (59%), Positives = 140/193 (72%)
Frame = +2
Query: 833 CTSLEFREVSTRLRDWFKALHESGSQNKKAKGSLRPERSRFDTSILPICKDSLGWMFNRL 1012
CT E R +++RL+DWF ALHE ++ K S + RFDTSILPICKDSLGWMFN+L
Sbjct: 17 CTDKELRNLASRLKDWFGALHEDANRVIKPTSS-DAAQGRFDTSILPICKDSLGWMFNKL 75
Query: 1013 DTNYDLLLDQSELGSIYLDKNEQCTEAFFNSCDTYRDRSISNNEWCYCFQRQQDPPCQTE 1192
D NYDLLLD SE+ +IYLDK E C + FNSCD+++D +SNNEWCYCFQ+ PCQ E
Sbjct: 76 DMNYDLLLDHSEINAIYLDKYEPCIKPLFNSCDSFKDGKLSNNEWCYCFQKPGGLPCQNE 135
Query: 1193 LSSIQKRLGVKKLLGQYIPQCDEDGYYKPMQCHGSAGQCWCVDRYGNEVVGSRTDGVADC 1372
++ IQK K LLG +IP+C+E+GYYK QCHGS GQCWCVD+YGNE+ GSR G C
Sbjct: 136 MNRIQKLSKGKSLLGAFIPRCNEEGYYKATQCHGSTGQCWCVDKYGNELAGSRKQGAVSC 195
Query: 1373 AADFEISGDFASG 1411
+ E SGDF SG
Sbjct: 196 EEEQETSGDFGSG 208
>ref|XP_003354339.1| PREDICTED: testican-1-like [Sus scrofa].
Length = 271
Score = 181 bits (458), Expect = 2e-45
Identities = 80/151 (52%), Positives = 102/151 (67%), Gaps = 1/151 (0%)
Frame = +2
Query: 338 PAGGSFLDDKQWLSTVSQYDREAGQWNRFRDDDYFRTWSPGRAFDQALDPAKDPCLNMKC 517
P G+FLD+ QWLSTVSQYDR+ WNRFRDDDYFR W+P + FDQALDP+KDPCL +KC
Sbjct: 33 PNNGNFLDNDQWLSTVSQYDRDK-YWNRFRDDDYFRNWNPNKPFDQALDPSKDPCLKVKC 91
Query: 518 GRHEVCIVQGSGTAVCIGQRRLAHSVKDAGAGHKQRRG-SPPSTCRQCLGVSMSPVCGSD 694
H+VC+ Q TA+C+ ++ L K HK G S C+ C + + VCGSD
Sbjct: 92 SPHKVCVTQDYQTALCVSRKHLLPRQKKGNVAHKHWVGPSNLVKCKPCPAIQSAMVCGSD 151
Query: 695 GHAYSSQCKLEYQACVLGKQISVRCEGHCPC 787
GH Y+S+CKLE+ AC GK ++ C+G CPC
Sbjct: 152 GHTYTSKCKLEFHACSTGKSLTTLCDGPCPC 182
>ref|XP_003361217.1| PREDICTED: nidogen-1, partial [Sus scrofa].
Length = 524
Score = 68.2 bits (165), Expect = 2e-11
Identities = 26/42 (61%), Positives = 31/42 (73%)
Frame = +2
Query: 1235 GQYIPQCDEDGYYKPMQCHGSAGQCWCVDRYGNEVVGSRTDG 1360
G ++P+CDE G+Y P QCHGS G CWCVDR G EV G+R G
Sbjct: 208 GLFVPECDEHGHYAPTQCHGSTGYCWCVDRDGREVEGTRRPG 249
>ref|NP_001090891.1| SPARC-like protein 1 [Sus scrofa].
Length = 662
Score = 65.1 bits (157), Expect = 1e-10
Identities = 63/260 (24%), Positives = 96/260 (36%), Gaps = 33/260 (12%)
Frame = +2
Query: 494 DPCLNMKCGRHEVCIVQGSGTAVCIGQRRLAHSVKDAGAGHKQRRGSPPSTCRQCLGVSM 673
D C++ +C R +C G C+ Q P TC +
Sbjct: 429 DSCMSFQCKRGHICKADQQGKPHCVCQ--------------------DPVTCPPTK--LL 466
Query: 674 SPVCGSDGHAYSSQCKLEYQACVL-----GKQISVRCEGHCPCPSDTTRSSSGNVKRVCT 838
VCG+D Y+S C L C L G Q+ + G C CT
Sbjct: 467 DQVCGTDNQTYASSCHLFATKCRLEGTKKGHQLQLDYFGACKSIP------------ACT 514
Query: 839 SLEFREVSTRLRDWFKAL---------HESGSQNKKAKGSLRP---ERSRF---DTSILP 973
E + R+RDW K + +G N+K + ++ + R D SI
Sbjct: 515 DFEVTQFPLRMRDWLKNILMQLYEPNPEHAGYLNEKQRNKVKKIYLDEKRLLAGDHSIDL 574
Query: 974 ICKD----------SLGWMFNRLDTN-YDLLLDQSELGSIY--LDKNEQCTEAFFNSCDT 1114
+ +D + W F+ LD + D +L SEL + L E C FF CD
Sbjct: 575 LLRDFKKNYHMYVYPVHWQFSELDQHPRDRVLTHSELAPLRASLVPMEHCITRFFGECDP 634
Query: 1115 YRDRSISNNEWCYCFQRQQD 1174
+D+ I+ EW CF+ +++
Sbjct: 635 NKDKHITLKEWGRCFEIKEE 654
>ref|XP_001926299.1| PREDICTED: nidogen-2 [Sus scrofa].
Length = 1293
Score = 64.7 bits (156), Expect = 2e-10
Identities = 25/38 (65%), Positives = 30/38 (78%)
Frame = +2
Query: 1241 YIPQCDEDGYYKPMQCHGSAGQCWCVDRYGNEVVGSRT 1354
+IPQCDE G++ P+QCHGS G CWCVD G EV G+RT
Sbjct: 879 HIPQCDEQGHFLPLQCHGSTGFCWCVDPNGQEVPGTRT 916
Score = 62.4 bits (150), Expect = 9e-10
Identities = 25/58 (43%), Positives = 37/58 (63%)
Frame = +2
Query: 1181 CQTELSSIQKRLGVKKLLGQYIPQCDEDGYYKPMQCHGSAGQCWCVDRYGNEVVGSRT 1354
C+ S+ + G QY+PQCD+ G++ P+QCHG + CWCVD+ G EV G+R+
Sbjct: 938 CERWRESLLEHYGGTPRDDQYVPQCDDLGHFTPLQCHGKSDFCWCVDQDGREVQGTRS 995
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 48,601,146
Number of extensions: 1519573
Number of successful extensions: 7236
Number of sequences better than 1.0e-05: 22
Number of HSP's gapped: 7153
Number of HSP's successfully gapped: 26
Length of query: 651
Length of database: 11,343,932
Length adjustment: 105
Effective length of query: 546
Effective length of database: 8,729,747
Effective search space: 4766441862
Effective search space used: 4766441862
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= OVR01_0021_B09
(1955 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr14 846 0.0
Sscrofa_Chr02 68 2e-08
>Sscrofa_Chr14
|| Length = 153851969
Score = 846 bits (427), Expect = 0.0
Identities = 430/431 (99%)
Strand = Plus / Plus
Query: 1507 tggtggcgaccaggatggctacatctgagggcagagatgcgctcattccacggtcctgtt 1566
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23503270 tggtggcgaccaggatggctacatctgagggcagagatgcgctcattccacggtcctgtt 23503329
Query: 1567 atttacgcagtgacagcctatggaggattacctttttgcccccaaacaaaatgattctaa 1626
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23503330 atttacgcagtgacagcctatggaggattacctttttgcccccaaacaaaatgattctaa 23503389
Query: 1627 gactcacttatattttgtatgattatttcagatattgcacctaatgtcgtagagctttat 1686
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23503390 gactcacttatattttgtatgattatttcagatattgcacctaatgtcgtagagctttat 23503449
Query: 1687 gtttaaataaggatcatttgctttgagtttttatatgccttagagaagagaacatatacg 1746
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23503450 gtttaaataaggatcatttgctttgagtttttatatgccttagagaagagaacatatacg 23503509
Query: 1747 gagactagccagacaaaagaaagctaggaagcgctgctgagatgaagagcaaagttcatg 1806
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23503510 gagactagccagacaaaagaaagctaggaagcgctgctgagatgaagagcaaagttcatg 23503569
Query: 1807 agaacaaaccatgtgcatctgccacaaacaaagcaacaaccagggtttgaggttgcatgg 1866
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23503570 agaacaaaccatgtgcatctgccacaaacaaagcaacaaccagggtttgaggttgcatgg 23503629
Query: 1867 gggatgtttcttagagaaattctaagttgaatctcccgaaacgtgttagtgacctgggtc 1926
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23503630 gagatgtttcttagagaaattctaagttgaatctcccgaaacgtgttagtgacctgggtc 23503689
Query: 1927 ccaaggatatt 1937
|||||||||||
Sbjct: 23503690 ccaaggatatt 23503700
Score = 432 bits (218), Expect = e-118
Identities = 221/222 (99%)
Strand = Plus / Plus
Query: 951 gatttgataccagtattttgccaatctgcaaggattcacttggctggatgtttaacagac 1010
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23492515 gatttgataccagtattttgccaatctgcaaggattcacttggctggatgtttaacagac 23492574
Query: 1011 tggacacaaactacgacctgctcctggaccagtcggagctggggagcatttacctggaca 1070
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23492575 tggacacaaactacgacctgctcctggaccagtcggagctggggagcatttacctggaca 23492634
Query: 1071 agaatgagcagtgcacggaggccttcttcaactcctgtgacacatacagggaccgctcca 1130
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23492635 agaatgagcagtgcacggaggccttcttcaactcctgtgacacatacagggaccgctcca 23492694
Query: 1131 tctccaacaacgagtggtgctactgcttccagaggcaacaag 1172
||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 23492695 tctccaacaacgagtggtgctactgcttccagaggcagcaag 23492736
Score = 345 bits (174), Expect = 6e-92
Identities = 174/174 (100%)
Strand = Plus / Plus
Query: 258 agatgctccgggcgccggccgtgctgtgcgtgtgcgcggccgcctggtgcgcgcaggctc 317
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23086207 agatgctccgggcgccggccgtgctgtgcgtgtgcgcggccgcctggtgcgcgcaggctc 23086266
Query: 318 tggcggtggccacgggccggccggccggcggcagttttctggacgacaaacaatggctca 377
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23086267 tggcggtggccacgggccggccggccggcggcagttttctggacgacaaacaatggctca 23086326
Query: 378 gcacggtgtcccagtacgaccgggaggccgggcagtggaaccgattccgagacg 431
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23086327 gcacggtgtcccagtacgaccgggaggccgggcagtggaaccgattccgagacg 23086380
Score = 278 bits (140), Expect = 1e-71
Identities = 140/140 (100%)
Strand = Plus / Plus
Query: 1234 agggcagtacatcccccagtgtgacgaagacggctactacaagccaatgcagtgccacgg 1293
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23500431 agggcagtacatcccccagtgtgacgaagacggctactacaagccaatgcagtgccacgg 23500490
Query: 1294 cagcgctgggcagtgctggtgtgtggacagatacggaaatgaagtcgtgggatccaggac 1353
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23500491 cagcgctgggcagtgctggtgtgtggacagatacggaaatgaagtcgtgggatccaggac 23500550
Query: 1354 agacggtgttgcggactgtg 1373
||||||||||||||||||||
Sbjct: 23500551 agacggtgttgcggactgtg 23500570
Score = 254 bits (128), Expect = 2e-64
Identities = 128/128 (100%)
Strand = Plus / Plus
Query: 1 ctcagatcccgtccctcctccgccgggagcagctcggagtcgcagggcagcggcgggcag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23085621 ctcagatcccgtccctcctccgccgggagcagctcggagtcgcagggcagcggcgggcag 23085680
Query: 61 agagagcgccccggtgccgcgtgcgccccggtgcagaagcgccccgagcctccggccctc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23085681 agagagcgccccggtgccgcgtgcgccccggtgcagaagcgccccgagcctccggccctc 23085740
Query: 121 ggaagcga 128
||||||||
Sbjct: 23085741 ggaagcga 23085748
Score = 244 bits (123), Expect = 2e-61
Identities = 123/123 (100%)
Strand = Plus / Plus
Query: 829 agtgtgcaccagcctggagttcagggaggtgtcgaccaggctgcgggactggttcaaggc 888
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23476186 agtgtgcaccagcctggagttcagggaggtgtcgaccaggctgcgggactggttcaaggc 23476245
Query: 889 ccttcacgagagcgggagccagaacaagaaggccaaaggctccctgcggccggagagaag 948
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23476246 ccttcacgagagcgggagccagaacaagaaggccaaaggctccctgcggccggagagaag 23476305
Query: 949 cag 951
|||
Sbjct: 23476306 cag 23476308
Score = 238 bits (120), Expect = 9e-60
Identities = 126/128 (98%)
Strand = Plus / Plus
Query: 588 acagtgtgaaagatgcaggagccgggcataagcagcggaggggttccccaccatccacct 647
|||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||
Sbjct: 23322392 acagtgtgaaagatgcaggagccgggcataagcagcggaggggtcccccgccatccacct 23322451
Query: 648 gcaggcagtgcttgggggtctccatgagccctgtctgtggctcagatggacatgcctact 707
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23322452 gcaggcagtgcttgggggtctccatgagccctgtctgtggctcagatggacatgcctact 23322511
Query: 708 cttcccag 715
||||||||
Sbjct: 23322512 cttcccag 23322519
Score = 230 bits (116), Expect = 2e-57
Identities = 116/116 (100%)
Strand = Plus / Plus
Query: 476 gctttagatccagctaaagacccgtgcttgaatatgaaatgtggccgccacgaagtgtgc 535
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23259854 gctttagatccagctaaagacccgtgcttgaatatgaaatgtggccgccacgaagtgtgc 23259913
Query: 536 attgtgcaaggttctgggaccgcggtctgcattggccagcggagacttgcccacag 591
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23259914 attgtgcaaggttctgggaccgcggtctgcattggccagcggagacttgcccacag 23259969
Score = 226 bits (114), Expect = 4e-56
Identities = 117/118 (99%)
Strand = Plus / Plus
Query: 713 cagtgcaaactagaataccaggcgtgtgtcttaggaaagcagatctcagtgagatgtgaa 772
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23328355 cagtgcaaactagaataccaggcgtgtgtcttaggaaagcagatctcagtgagatgtgaa 23328414
Query: 773 gggcattgcccatgtccttcagatacgaccaggagctcaagcggaaatgtgaaaagag 830
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 23328415 gggcattgcccatgtccttcagatacgaccaggagctcaagaggaaatgtgaaaagag 23328472
Score = 123 bits (62), Expect = 4e-25
Identities = 65/66 (98%)
Strand = Plus / Plus
Query: 1171 agatccgccttgccagacagagctcagcagtatccagaagcggcttggggtcaagaagct 1230
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 23497686 agatccgccttgccagacagagctcagcagtattcagaagcggcttggggtcaagaagct 23497745
Query: 1231 cctagg 1236
||||||
Sbjct: 23497746 cctagg 23497751
Score = 111 bits (56), Expect = 1e-21
Identities = 59/60 (98%)
Strand = Plus / Plus
Query: 200 agtcctccgctccaaccaagtcgcatccggagctcctgcagctcggatccggggaggaag 259
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23085820 agtcctccgctccagccaagtcgcatccggagctcctgcagctcggatccggggaggaag 23085879
Score = 95.6 bits (48), Expect = 9e-17
Identities = 48/48 (100%)
Strand = Plus / Plus
Query: 1373 gccgctgatttcgagatctccggagattttgcgagtggagatttccga 1420
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23503136 gccgctgatttcgagatctccggagattttgcgagtggagatttccga 23503183
Score = 91.7 bits (46), Expect = 1e-15
Identities = 46/46 (100%)
Strand = Plus / Plus
Query: 431 gatgattatttccgcacttggagtccaggaagagccttcgatcagg 476
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23216098 gatgattatttccgcacttggagtccaggaagagccttcgatcagg 23216143
>Sscrofa_Chr02
|| Length = 162569375
Score = 67.9 bits (34), Expect = 2e-08
Identities = 46/50 (92%)
Strand = Plus / Minus
Query: 1283 cagtgccacggcagcgctgggcagtgctggtgtgtggacagatacggaaa 1332
||||||||||||||| | |||||||||||||||||||||| ||||||||
Sbjct: 144722353 cagtgccacggcagcacagggcagtgctggtgtgtggacaagtacggaaa 144722304
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 46,558,270
Number of extensions: 244
Number of successful extensions: 244
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 244
Number of HSP's successfully gapped: 14
Length of query: 1955
Length of database: 2,808,509,378
Length adjustment: 22
Effective length of query: 1933
Effective length of database: 2,808,408,574
Effective search space: 5428653773542
Effective search space used: 5428653773542
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)